Fwd: PNAS Table of Contents for 8 March 2016; Vol. 113, No. 10

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Proceedings of the National Academy of Sciences 8 March 2016; Vol. 113, No. 10 This Week in PNAS In This Issue Letters (Online Only) Although critical, carbon choices alone do not determine the fate of coastal cities Ezra Boyd, Vincenzo Pasquantonio, Frank Rabalais, and Scott Eustis Reply to Boyd et al.: Large long-term sea level projections do not mean giving up on coastal cities Benjamin H. Strauss, Scott Kulp, and Anders Levermann Unnatural paradigm calls into question whether macaques' social decisions represent empathy Katherine A. Cronin Reply to Cronin: Consistency between decision-making, gaze, and natural social behavior validates inferences on macaque social cognition Sebastien Ballesta and Jean-René Duhamel News Feature News Feature: Genetic mutations you want  Sarah C. P. Williams An in-depth look at trending science issues. Commentaries Beating against the clock Lilei Zhang and Mukesh K. Jain Clues on the coding of reward cues by the nucleus accumbens Veronica A. Alvarez Coexpression profiles reveal hidden gene networks Konstantina Chachlaki and Vincent Prévot PNAS Plus Significance Statements PNAS Plus Significance Statements Brief statements written by the authors about the significance of their papers. Physical Sciences Applied Physical Sciences Invisible metallic mesh  Dexin Ye, Ling Lu, John D. Joannopoulos, Marin Soljačić, and Lixin Ran Chemistry Identification and quantitation of lipid C=C location isomers: A shotgun lipidomics approach enabled by photochemical reaction Xiaoxiao Ma, Leelyn Chong, Ran Tian, Riyi Shi, Tony Y. Hu, Zheng Ouyang, and Yu Xia Solar photothermochemical alkane reverse combustion Wilaiwan Chanmanee, Mohammad Fakrul Islam, Brian H. Dennis, and Frederick M. MacDonnell Convective flow reversal in self-powered enzyme micropumps Isamar Ortiz-Rivera, Henry Shum, Arjun Agrawal, Ayusman Sen, and Anna C. Balazs Computer Sciences Parallel computation with molecular-motor-propelled agents in nanofabricated networks  Dan V. Nicolau Jr., Mercy Lard, Till Korten, Falco C. M. J. M. van Delft, Malin Persson, Elina Bengtsson, Alf Månsson, Stefan Diez, Heiner Linke, and Dan V. Nicolau Environmental Sciences Future sea level rise constrained by observations and long-term commitment  Matthias Mengel, Anders Levermann, Katja Frieler, Alexander Robinson, Ben Marzeion, and Ricarda Winkelmann Mathematics Riemann hypothesis for period polynomials of modular forms Seokho Jin, Wenjun Ma, Ken Ono, and Kannan Soundararajan Physics Contact inhibition of locomotion determines cell–cell and cell–substrate forces in tissues Juliane Zimmermann, Brian A. Camley, Wouter-Jan Rappel, and Herbert Levine Sustainability Science Intensification of phosphorus cycling in China since the 1600s  Xin Liu, Hu Sheng, Songyan Jiang, Zengwei Yuan, Chaosheng Zhang, and James J. Elser Social Sciences Economic Sciences The effect of rights-based fisheries management on risk taking and fishing safety Lisa Pfeiffer and Trevor Gratz Cognitive fatigue influences students' performance on standardized tests  Hans Henrik Sievertsen, Francesca Gino, and Marco Piovesan Psychological and Cognitive Sciences Shame closely tracks the threat of devaluation by others, even across cultures Daniel Sznycer, John Tooby, Leda Cosmides, Roni Porat, Shaul Shalvi, and Eran Halperin Core disgust is attenuated by ingroup relations Stephen D. Reicher, Anne Templeton, Fergus Neville, Lucienne Ferrari, and John Drury Delay discounting, genetic sensitivity, and leukocyte telomere length Onn-Siong Yim, Xing Zhang, Idan Shalev, Mikhail Monakhov, Songfa Zhong, Ming Hsu, Soo Hong Chew, Poh San Lai, and Richard P. Ebstein Social Sciences Driver crash risk factors and prevalence evaluation using naturalistic driving data Thomas A. Dingus, Feng Guo, Suzie Lee, Jonathan F. Antin, Miguel Perez, Mindy Buchanan-King, and Jonathan Hankey Sustainability Science Future sea level rise constrained by observations and long-term commitment  Matthias Mengel, Anders Levermann, Katja Frieler, Alexander Robinson, Ben Marzeion, and Ricarda Winkelmann The effect of rights-based fisheries management on risk taking and fishing safety Lisa Pfeiffer and Trevor Gratz Biological Sciences Biochemistry ER stress stimulates production of the key antimicrobial peptide, cathelicidin, by forming a previously unidentified intracellular S1P signaling complex Kyungho Park, Hiroko Ikushiro, Ho Seong Seo, Kyong-Oh Shin, Young il Kim, Jong Youl Kim, Yong-Moon Lee, Takato Yano, Walter M. Holleran, Peter Elias, and Yoshikazu Uchida Identification and quantitation of lipid C=C location isomers: A shotgun lipidomics approach enabled by photochemical reaction Xiaoxiao Ma, Leelyn Chong, Ran Tian, Riyi Shi, Tony Y. Hu, Zheng Ouyang, and Yu Xia Structure of an endogenous yeast 26S proteasome reveals two major conformational states  Bai Luan, Xiuliang Huang, Jianping Wu, Ziqing Mei, Yiwei Wang, Xiaobin Xue, Chuangye Yan, Jiawei Wang, Daniel J. Finley, Yigong Shi, and Feng Wang ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses  Ming-Yan Cheung, Xiaorong Li, Rui Miao, Yu-Hang Fong, Kwan-Pok Li, Yuk-Lin Yung, Mei-Hui Yu, Kam-Bo Wong, Zhongzhou Chen, and Hon-Ming Lam Biophysics and Computational Biology Parallel computation with molecular-motor-propelled agents in nanofabricated networks  Dan V. Nicolau Jr., Mercy Lard, Till Korten, Falco C. M. J. M. van Delft, Malin Persson, Elina Bengtsson, Alf Månsson, Stefan Diez, Heiner Linke, and Dan V. Nicolau Role of bacteriophage T4 baseplate in regulating assembly and infection Moh Lan Yap, Thomas Klose, Fumio Arisaka, Jeffrey A. Speir, David Veesler, Andrei Fokine, and Michael G. Rossmann Cell Biology Contact inhibition of locomotion determines cell–cell and cell–substrate forces in tissues Juliane Zimmermann, Brian A. Camley, Wouter-Jan Rappel, and Herbert Levine Regulation of seminiferous tubule-associated stem Leydig cells in adult rat testes Xiaoheng Li, Zhao Wang, Zhenming Jiang, Jingjing Guo, Yuxi Zhang, Chenhao Li, Jinyong Chung, Janet Folmer, June Liu, Qingquan Lian, Renshan Ge, Barry R. Zirkin, and Haolin Chen Dynamics inside the cancer cell attractor reveal cell heterogeneity, limits of stability, and escape  Qin Li, Anders Wennborg, Erik Aurell, Erez Dekel, Jie-Zhi Zou, Yuting Xu, Sui Huang, and Ingemar Ernberg Environmental Sciences Quantitative proteomic analyses of mammary organoids reveals distinct signatures after exposure to environmental chemicals Katherine E. Williams, George A. Lemieux, Maria E. Hassis, Adam B. Olshen, Susan J. Fisher, and Zena Werb Evolution Predictable allele frequency changes due to habitat fragmentation in the Glanville fritillary butterfly  Toby Fountain, Marko Nieminen, Jukka Sirén, Swee Chong Wong, and Ilkka Hanski Sterol and genomic analyses validate the sponge biomarker hypothesis David A. Gold, Jonathan Grabenstatter, Alex de Mendoza, Ana Riesgo, Iñaki Ruiz-Trillo, and Roger E. Summons Phylogenetically resolving epidemiologic linkage  Ethan O. Romero-Severson, Ingo Bulla, and Thomas Leitner Genetics Rare recombination events generate sequence diversity among balancer chromosomes in Drosophila melanogaster  Danny E. Miller, Kevin R. Cook, Nazanin Yeganeh Kazemi, Clarissa B. Smith, Alexandria J. Cockrell, R. Scott Hawley, and Casey M. Bergman Immunology and Inflammation Differences in codon bias and GC content contribute to the balanced expression of TLR7 and TLR9 Zachary R. Newman, Janet M. Young, Nicholas T. Ingolia, and Gregory M. Barton Contraction of the type I IFN locus and unusual constitutive expression of IFN-α in bats  Peng Zhou, Mary Tachedjian, James W. Wynne, Victoria Boyd, Jie Cui, Ina Smith, Christopher Cowled, Justin H. J. Ng, Lawrence Mok, Wojtek P. Michalski, Ian H. Mendenhall, Gilda Tachedjian, Lin-Fa Wang, and Michelle L. Baker CXCL13 is a plasma biomarker of germinal center activity Colin Havenar-Daughton, Madelene Lindqvist, Antje Heit, Jennifer E. Wu, Samantha M. Reiss, Kayla Kendric, Simon Bélanger, Sudhir Pai Kasturi, Elise Landais, Rama S. Akondy, Helen M. McGuire, Marcella Bothwell, Parsia A. Vagefi, Eileen Scully, IAVI Protocol C Principal Investigators, Georgia D. Tomaras, Mark M. Davis, Pascal Poignard, Rafi Ahmed, Bruce D. Walker, Bali Pulendran, M. Juliana McElrath, Daniel E. Kaufmann, and Shane Crotty Medical Sciences Brown adipose tissue transplantation ameliorates polycystic ovary syndrome Xiaoxue Yuan, Tao Hu, Han Zhao, Yuanyuan Huang, Rongcai Ye, Jun Lin, Chuanhai Zhang, Hanlin Zhang, Gang Wei, Huiqiao Zhou, Meng Dong, Jun Zhao, Haibin Wang, Qingsong Liu, Hyuek Jong Lee, Wanzhu Jin, and Zi-Jiang Chen Microbiology Expression of factor H binding protein in meningococcal strains can vary at least 15-fold and is genetically determined  Massimiliano Biagini, Marco Spinsanti, Gabriella De Angelis, Sara Tomei, Ilaria Ferlenghi, Maria Scarselli, Fabio Rigat, Nicola Messuti, Alessia Biolchi, Alessandro Muzzi, Giulia Anderloni, Brunella Brunelli, Elena Cartocci, Francesca Buricchi, Chiara Tani, Maria Stella, Monica Moschioni, Elena Del Tordello, Annalisa Colaprico, Silvana Savino, Marzia M. Giuliani, Isabel Delany, Mariagrazia Pizza, Paolo Costantino, Nathalie Norais, Rino Rappuoli, and Vega Masignani Identification of a novel cell death-inducing domain reveals that fungal amyloid-controlled programmed cell death is related to necroptosis Asen Daskalov, Birgit Habenstein, Raimon Sabaté, Mélanie Berbon, Denis Martinez, Stéphane Chaignepain, Bénédicte Coulary-Salin, Kay Hofmann, Antoine Loquet, and Sven J. Saupe Neuroscience Emergence of functional subnetworks in layer 2/3 cortex induced by sequential spikes in vivo Taekeun Kim, Won Chan Oh, Joon Ho Choi, and Hyung-Bae Kwon Presynaptic serotonin 2A receptors modulate thalamocortical plasticity and associative learning Alexander Barre, Coralie Berthoux, Dimitri De Bundel, Emmanuel Valjent, Joël Bockaert, Philippe Marin, and Carine Bécamel Contrasting responses within a single neuron class enable sex-specific attraction in Caenorhabditis elegans Anusha Narayan, Vivek Venkatachalam, Omer Durak, Douglas K. Reilly, Neelanjan Bose, Frank C. Schroeder, Aravinthan D. T. Samuel, Jagan Srinivasan, and Paul W. Sternberg In vivo imaging identifies temporal signature of D1 and D2 medium spiny neurons in cocaine reward  Erin S. Calipari, Rosemary C. Bagot, Immanuel Purushothaman, Thomas J. Davidson, Jordan T. Yorgason, Catherine J. Peña, Deena M. Walker, Stephen T. Pirpinias, Kevin G. Guise, Charu Ramakrishnan, Karl Deisseroth, and Eric J. Nestler Rhythmic expression of cryptochrome induces the circadian clock of arrhythmic suprachiasmatic nuclei through arginine vasopressin signaling Mathew D. Edwards, Marco Brancaccio, Johanna E. Chesham, Elizabeth S. Maywood, and Michael H. Hastings Genome-wide coexpression of steroid receptors in the mouse brain: Identifying signaling pathways and functionally coordinated regions   Ahmed Mahfouz, Boudewijn P. F. Lelieveldt, Aldo Grefhorst, Lisa T. C. M. van Weert, Isabel M. Mol, Hetty C. M. Sips, José K. van den Heuvel, Nicole A. Datson, Jenny A. Visser, Marcel J. T. Reinders, and Onno C. Meijer Atoms of recognition in human and computer vision  Shimon Ullman, Liav Assif, Ethan Fetaya, and Daniel Harari Rehabilitation drives enhancement of neuronal structure in functionally relevant neuronal subsets  Ling Wang, James M. Conner, Alan H. Nagahara, and Mark H. Tuszynski Early doors (Edo) mutant mouse reveals the importance of period 2 (PER2) PAS domain structure for circadian pacemaking  Stefania Militi, Elizabeth S. Maywood, Colby R. Sandate, Johanna E. Chesham, Alun R. Barnard, Michael J. Parsons, Jennifer L. Vibert, Greg M. Joynson, Carrie L. Partch, Michael H. Hastings, and Patrick M. Nolan Physiology Circadian misalignment increases cardiovascular disease risk factors in humans Christopher J. Morris, Taylor E. Purvis, Kun Hu, and Frank A. J. L. Scheer Junctophilin-4, a component of the endoplasmic reticulum–plasma membrane junctions, regulates Ca2+ dynamics in T cells Jin Seok Woo, Sonal Srikanth, Miyuki Nishi, Peipei Ping, Hiroshi Takeshima, and Yousang Gwack Plant Biology ROTUNDA3 function in plant development by phosphatase 2A-mediated regulation of auxin transporter recycling Michael Karampelias, Pia Neyt, Steven De Groeve, Stijn Aesaert, Griet Coussens, Jakub Rolčík, Leonardo Bruno, Nancy De Winne, Annemie Van Minnebruggen, Marc Van Montagu, María Rosa Ponce, José Luis Micol, Jiří Friml, Geert De Jaeger, and Mieke Van Lijsebettens Tetratricopeptide repeat protein protects photosystem I from oxidative disruption during assembly Mark Heinnickel, Rick G. Kim, Tyler M. Wittkopp, Wenqiang Yang, Karim A. Walters, Stephen K. Herbert, and Arthur R. Grossman Psychological and Cognitive Sciences Delay discounting, genetic sensitivity, and leukocyte telomere length Onn-Siong Yim, Xing Zhang, Idan Shalev, Mikhail Monakhov, Songfa Zhong, Ming Hsu, Soo Hong Chew, Poh San Lai, and Richard P. Ebstein Clocking the social mind by identifying mental processes in the IAT with electrical neuroimaging Bastian Schiller, Lorena R. R. Gianotti, Thomas Baumgartner, Kyle Nash, Thomas Koenig, and Daria Knoch Corrections (Online Only) Correction for Plamont et al., Small fluorescence-activating and absorption-shifting tag for tunable protein imaging in vivo Correction for Mitchener et al., Competition and allostery govern substrate selectivity of cyclooxygenase-2 Correction for Lavine et al., Distinct macrophage lineages contribute to disparate patterns of cardiac recovery and remodeling in the neonatal and adult heart Correction for Mesquita et al., Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (....) Or by mail: Customer Service * 425 Broadway St * Redwood City, CA 94063 * U.S.A. Copyright © 2016 by the National Academy of Sciences