20 listopada 2014

Fwd: PNAS Early Edition for 19 Nov 2014


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Date: Thu, Nov 20, 2014 at 7:43 AM
Subject: PNAS Early Edition for 19 Nov 2014
To: pascal.alter@gmail.com


PNAS    Proceedings of the National Academy of Sciences
Commentaries
Freezing viruses in time
Edward C. Holmes

Perspectives
Evolutionary cell biology: Two origins, one objective
Michael Lynch, Mark C. Field, Holly V. Goodson, Harmit S. Malik, José B. Pereira-Leal, David S. Roos, Aaron P. Turkewitz, and Shelley Sazer
Dealing with femtorisks in international relations
Aaron Benjamin Frank, Margaret Goud Collins, Simon A. Levin, Andrew W. Lo, Joshua Ramo, Ulf Dieckmann, Victor Kremenyuk, Arkady Kryazhimskiy, JoAnne Linnerooth-Bayer, Ben Ramalingam, J. Stapleton Roy, Donald G. Saari, Stefan Thurner, and Detlof von Winterfeldt
Meal frequency and timing in health and disease
Mark P. Mattson, David B. Allison, Luigi Fontana, Michelle Harvie, Valter D. Longo, Willy J. Malaisse, Michael Mosley, Lucia Notterpek, Eric Ravussin, Frank A. J. L. Scheer, Thomas N. Seyfried, Krista A. Varady, and Satchidananda Panda

Epigenetic Changes in the Developing Brain: Effects on Behavior Sackler Colloquium (free online)
Biological Sciences — Genetics

Physical Sciences
Applied Physical Sciences
Instability-induced pattern formation of photoactivated functional polymers
Henning Galinski, Antonio Ambrosio, Pasqualino Maddalena, Iwan Schenker, Ralph Spolenak, and Federico Capasso
Charging-free electrochemical system for harvesting low-grade thermal energy
Yuan Yang, Seok Woo Lee, Hadi Ghasemi, James Loomis, Xiaobo Li, Daniel Kraemer, Guangyuan Zheng, Yi Cui, and Gang Chen
Chemistry
Orientation of aromatic residues in amyloid cores: Structural insights into prion fiber diversity
Anna Reymer, Kendra K. Frederick, Sandra Rocha, Tamás Beke-Somfai, Catherine C. Kitts, Susan Lindquist, and Bengt Nordén
Graphene cover-promoted metal-catalyzed reactions
Yunxi Yao, Qiang Fu, Y. Y. Zhang, Xuefei Weng, Huan Li, Mingshu Chen, Li Jin, Aiyi Dong, Rentao Mu, Peng Jiang, Li Liu, Hendrik Bluhm, Zhi Liu, S. B. Zhang, and Xinhe Bao
Earth, Atmospheric, and Planetary Sciences
Silicon isotopes in angrites and volatile loss in planetesimals
Emily A. Pringle, Frédéric Moynier, Paul S. Savage, James Badro, and Jean-Alix Barrat
Orbital apocenter is not a sufficient condition for HST/STIS detection of Europa's water vapor aurora Open Access Article
Lorenz Roth, Kurt D. Retherford, Joachim Saur, Darrell F. Strobel, Paul D. Feldman, Melissa A. McGrath, and Francis Nimmo
Earthquake and tsunami forecasts: Relation of slow slip events to subsequent earthquake rupture Open Access Article
Timothy H. Dixon, Yan Jiang, Rocco Malservisi, Robert McCaffrey, Nicholas Voss, Marino Protti, and Victor Gonzalez
Environmental Sciences
Rapid climate change did not cause population collapse at the end of the European Bronze Age
Ian Armit, Graeme T. Swindles, Katharina Becker, Gill Plunkett, and Maarten Blaauw
Physics
Modulation of DNA loop lifetimes by the free energy of loop formation
Yi-Ju Chen, Stephanie Johnson, Peter Mulligan, Andrew J. Spakowitz, and Rob Phillips
Force distribution affects vibrational properties in hard-sphere glasses
Eric DeGiuli, Edan Lerner, Carolina Brito, and Matthieu Wyart
A model for the generation and interconversion of ER morphologies
Tom Shemesh, Robin W. Klemm, Fabian B. Romano, Songyu Wang, Joshua Vaughan, Xiaowei Zhuang, Hanna Tukachinsky, Michael M. Kozlov, and Tom A. Rapoport
Revealing an unusual transparent phase of superhard iron tetraboride under high pressure
Komsilp Kotmool, Thanayut Kaewmaraya, Sudip Chakraborty, Jonas Anversa, Thiti Bovornratanaraks, Wei Luo, Huiyang Gou, Paulo Cesar Piquini, Tae Won Kang, Ho-kwang Mao, and Rajeev Ahuja

Social Sciences
Anthropology
Rapid climate change did not cause population collapse at the end of the European Bronze Age
Ian Armit, Graeme T. Swindles, Katharina Becker, Gill Plunkett, and Maarten Blaauw
Economic Sciences
Ethnic diversity deflates price bubbles Open Access Article
Sheen S. Levine, Evan P. Apfelbaum, Mark Bernard, Valerie L. Bartelt, Edward J. Zajac, and David Stark
Psychological and Cognitive Sciences
Harm to others outweighs harm to self in moral decision making Open Access Article
Molly J. Crockett, Zeb Kurth-Nelson, Jenifer Z. Siegel, Peter Dayan, and Raymond J. Dolan
Credit scores, cardiovascular disease risk, and human capital Open Access Article
Salomon Israel, Avshalom Caspi, Daniel W. Belsky, HonaLee Harrington, Sean Hogan, Renate Houts, Sandhya Ramrakha, Seth Sanders, Richie Poulton, and Terrie E. Moffitt
Mapping the unconscious maintenance of a lost first language
Lara J. Pierce, Denise Klein, Jen-Kai Chen, Audrey Delcenserie, and Fred Genesee
Social Sciences
Static network structure can stabilize human cooperation Open Access Article
David G. Rand, Martin A. Nowak, James H. Fowler, and Nicholas A. Christakis

Biological Sciences
Applied Biological Sciences
An engineered affibody molecule with pH-dependent binding to FcRn mediates extended circulatory half-life of a fusion protein
Johan Seijsing, Malin Lindborg, Ingmarie Höidén-Guthenberg, Heiko Bönisch, Elin Guneriusson, Fredrik Y. Frejd, Lars Abrahmsén, Caroline Ekblad, John Löfblom, Mathias Uhlén, and Torbjörn Gräslund
G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments
Pavel Ivanov, Elizabeth O'Day, Mohamed M. Emara, Gerhard Wagner, Judy Lieberman, and Paul Anderson
NanoFlares for the detection, isolation, and culture of live tumor cells from human blood
Tiffany L. Halo, Kaylin M. McMahon, Nicholas L. Angeloni, Yilin Xu, Wei Wang, Alyssa B. Chinen, Dmitry Malin, Elena Strekalova, Vincent L. Cryns, Chonghui Cheng, Chad A. Mirkin, and C. Shad Thaxton
Aptamer photoregulation in vivo
Lele Li, Rong Tong, Hunghao Chu, Weiping Wang, Robert Langer, and Daniel S. Kohane
Biochemistry
Natural low-molecular mass organic compounds with oxidase activity as organocatalysts
Tatsuya Nishiyama, Yoshiteru Hashimoto, Hitoshi Kusakabe, Takuto Kumano, and Michihiko Kobayashi
Structure of the meningococcal vaccine antigen NadA and epitope mapping of a bactericidal antibody Open Access Article
Enrico Malito, Marco Biancucci, Agnese Faleri, Ilaria Ferlenghi, Maria Scarselli, Giulietta Maruggi, Paola Lo Surdo, Daniele Veggi, Alessia Liguori, Laura Santini, Isabella Bertoldi, Roberto Petracca, Sara Marchi, Giacomo Romagnoli, Elena Cartocci, Irene Vercellino, Silvana Savino, Glen Spraggon, Nathalie Norais, Mariagrazia Pizza, Rino Rappuoli, Vega Masignani, and Matthew James Bottomley
Structural model of an mRNA in complex with the bacterial chaperone Hfq
Yi Peng, Joseph E. Curtis, Xianyang Fang, and Sarah A. Woodson
Activity-regulating structural changes and autoantibody epitopes in transglutaminase 2 assessed by hydrogen/deuterium exchange Open Access Article
Rasmus Iversen, Simon Mysling, Kathrin Hnida, Thomas J. D. Jørgensen, and Ludvig M. Sollid
Combinatorial regulation of a signal-dependent activator by phosphorylation and acetylation
Jose C. Paz, Sang-Ho Park, Naomi Phillips, Shigenobu Matsumura, Wen-Wei Tsai, Lawryn Kasper, Paul K. Brindle, Guangtao Zhang, Ming-Ming Zhou, Peter E. Wright, and Marc Montminy
Biophysics and Computational Biology
Modulation of DNA loop lifetimes by the free energy of loop formation
Yi-Ju Chen, Stephanie Johnson, Peter Mulligan, Andrew J. Spakowitz, and Rob Phillips
Structures of protective antibodies reveal sites of vulnerability on Ebola virus
Charles D. Murin, Marnie L. Fusco, Zachary A. Bornholdt, Xiangguo Qiu, Gene G. Olinger, Larry Zeitlin, Gary P. Kobinger, Andrew B. Ward, and Erica Ollmann Saphire
Orientation of aromatic residues in amyloid cores: Structural insights into prion fiber diversity
Anna Reymer, Kendra K. Frederick, Sandra Rocha, Tamás Beke-Somfai, Catherine C. Kitts, Susan Lindquist, and Bengt Nordén
Global structural changes of an ion channel during its gating are followed by ion mobility mass spectrometry
Albert Konijnenberg, Duygu Yilmaz, Helgi I. Ingólfsson, Anna Dimitrova, Siewert J. Marrink, Zhuolun Li, Catherine Vénien-Bryan, Frank Sobott, and Armağan Koçer
Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging
Jérôme Boulanger, Charles Gueudry, Daniel Münch, Bertrand Cinquin, Perrine Paul-Gilloteaux, Sabine Bardin, Christophe Guérin, Fabrice Senger, Laurent Blanchoin, and Jean Salamero
Relating influenza virus membrane fusion kinetics to stoichiometry of neutralizing antibodies at the single-particle level
Jason J. Otterstrom, Boerries Brandenburg, Martin H. Koldijk, Jarek Juraszek, Chan Tang, Samaneh Mashaghi, Ted Kwaks, Jaap Goudsmit, Ronald Vogels, Robert H. E. Friesen, and Antoine M. van Oijen
Cell Biology
Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent
Twana Alkasalias, Emilie Flaberg, Vladimir Kashuba, Andrey Alexeyenko, Tatiana Pavlova, Andrii Savchenko, Laszlo Szekely, George Klein, and Hayrettin Guven
A model for the generation and interconversion of ER morphologies
Tom Shemesh, Robin W. Klemm, Fabian B. Romano, Songyu Wang, Joshua Vaughan, Xiaowei Zhuang, Hanna Tukachinsky, Michael M. Kozlov, and Tom A. Rapoport
Developmental Biology
Environmental Sciences
The commonly used antimicrobial additive triclosan is a liver tumor promoter
Mei-Fei Yueh, Koji Taniguchi, Shujuan Chen, Ronald M. Evans, Bruce D. Hammock, Michael Karin, and Robert H. Tukey
Evolution
Static network structure can stabilize human cooperation Open Access Article
David G. Rand, Martin A. Nowak, James H. Fowler, and Nicholas A. Christakis
Reducing the genetic code induces massive rearrangement of the proteome
Patrick O'Donoghue, Laure Prat, Martin Kucklick, Johannes G. Schäfer, Katharina Riedel, Jesse Rinehart, Dieter Söll, and Ilka U. Heinemann
Genetics
Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinerea
Lukas Chavez, Yun Huang, Khai Luong, Suneet Agarwal, Lakshminarayan M. Iyer, William A. Pastor, Virginia K. Hench, Sylvia A. Frazier-Bowers, Evgenia Korol, Shuo Liu, Mamta Tahiliani, Yinsheng Wang, Tyson A. Clark, Jonas Korlach, Patricia J. Pukkila, L. Aravind, and Anjana Rao
Synaptonemal complex extension from clustered telomeres mediates full-length chromosome pairing in Schmidtea mediterranea Open Access Article
Youbin Xiang, Danny E. Miller, Eric J. Ross, Alejandro Sánchez Alvarado, and R. Scott Hawley
Immunology and Inflammation
Optimal T-cell receptor affinity for inducing autoimmunity
Sabrina Koehli, Dieter Naeher, Virginie Galati-Fournier, Dietmar Zehn, and Ed Palmer
Basophil-mediated protection against gastrointestinal helminths requires IgE-induced cytokine secretion
Christian Schwartz, Adriana Turqueti-Neves, Susanne Hartmann, Philipp Yu, Falk Nimmerjahn, and David Voehringer
Caspase-1 autoproteolysis is differentially required for NLRP1b and NLRP3 inflammasome function Open Access Article
Baptiste Guey, Mélanie Bodnar, Serge N. Manié, Aubry Tardivel, and Virginie Petrilli
APE1 is dispensable for S-region cleavage but required for its repair in class switch recombination
Jianliang Xu, Afzal Husain, Wenjun Hu, Tasuku Honjo, and Maki Kobayashi
Medical Sciences
Ovarian cancer stem cells express ROR1, which can be targeted for anti–cancer-stem-cell therapy Open Access Article
Suping Zhang, Bing Cui, Hsien Lai, Grace Liu, Emanuela M. Ghia, George F. Widhopf II, Zhuhong Zhang, Christina C. N. Wu, Liguang Chen, Rongrong Wu, Richard Schwab, Dennis A. Carson, and Thomas J. Kipps
Agonists of growth hormone-releasing hormone stimulate self-renewal of cardiac stem cells and promote their survival
Victoria Florea, Sonia S. Majid, Rosemeire M. Kanashiro-Takeuchi, Ren-Zhi Cai, Norman L. Block, Andrew V. Schally, Joshua M. Hare, and Claudia O. Rodrigues
Melanopsin mediates light-dependent relaxation in blood vessels
Gautam Sikka, G. Patrick Hussmann, Deepesh Pandey, Suyi Cao, Daijiro Hori, Jong Taek Park, Jochen Steppan, Jae Hyung Kim, Viachaslau Barodka, Allen C. Myers, Lakshmi Santhanam, Daniel Nyhan, Marc K. Halushka, Raymond C. Koehler, Solomon H. Snyder, Larissa A. Shimoda, and Dan E. Berkowitz
Tubulin hyperacetylation is adaptive in cardiac proteotoxicity by promoting autophagy
Patrick M. McLendon, Bradley S. Ferguson, Hanna Osinska, Md. Shenuarin Bhuiyan, Jeanne James, Timothy A. McKinsey, and Jeffrey Robbins
Disruption of Lrp4 function by genetic deletion or pharmacological blockade increases bone mass and serum sclerostin levels Open Access Article
Ming-Kang Chang, Ina Kramer, Thomas Huber, Bernd Kinzel, Sabine Guth-Gundel, Olivier Leupin, and Michaela Kneissel
Young capillary vessels rejuvenate aged pancreatic islets
Joana Almaça, Judith Molina, Rafael Arrojo e Drigo, Midhat H. Abdulreda, Won Bae Jeon, Per-Olof Berggren, Alejandro Caicedo, and Hong Gil Nam
VEGF-B selectively regenerates injured peripheral neurons and restores sensory and trophic functions Open Access Article
Victor H. Guaiquil, Zan Pan, Natalia Karagianni, Shima Fukuoka, Gemstonn Alegre, and Mark I. Rosenblatt
Microbiology
Densovirus associated with sea-star wasting disease and mass mortality Open Access Article
Ian Hewson, Jason B. Button, Brent M. Gudenkauf, Benjamin Miner, Alisa L. Newton, Joseph K. Gaydos, Janna Wynne, Cathy L. Groves, Gordon Hendler, Michael Murray, Steven Fradkin, Mya Breitbart, Elizabeth Fahsbender, Kevin D. Lafferty, A. Marm Kilpatrick, C. Melissa Miner, Peter Raimondi, Lesanna Lahner, Carolyn S. Friedman, Stephen Daniels, Martin Haulena, Jeffrey Marliave, Colleen A. Burge, Morgan E. Eisenlord, and C. Drew Harvell
Global discovery of colonization determinants in the squid symbiont Vibrio fischeri Open Access Article
John F. Brooks II, Mattias C. Gyllborg, David C. Cronin, Sarah J. Quillin, Celeste A. Mallama, Randi Foxall, Cheryl Whistler, Andrew L. Goodman, and Mark J. Mandel
Complex two-component signaling regulates the general stress response in Alphaproteobacteria
Andreas Kaczmarczyk, Ramon Hochstrasser, Julia A. Vorholt, and Anne Francez-Charlot
Cytoplasmic HIV-1 RNA is mainly transported by diffusion in the presence or absence of Gag protein
Jianbo Chen, David Grunwald, Luca Sardo, Andrea Galli, Sergey Plisov, Olga A. Nikolaitchik, De Chen, Stephen Lockett, Daniel R. Larson, Vinay K. Pathak, and Wei-Shau Hu
Neuroscience
The vertical occipital fasciculus: A century of controversy resolved by in vivo measurements
Jason D. Yeatman, Kevin S. Weiner, Franco Pestilli, Ariel Rokem, Aviv Mezer, and Brian A. Wandell
α2A adrenergic receptor promotes amyloidogenesis through disrupting APP-SorLA interaction
Yunjia Chen, Yin Peng, Pulin Che, Mary Gannon, Yin Liu, Ling Li, Guojun Bu, Thomas van Groen, Kai Jiao, and Qin Wang
Topoisomerase 1 inhibition reversibly impairs synaptic function
Angela M. Mabb, Paul H. M. Kullmann, Margaret A. Twomey, Jayalakshmi Miriyala, Benjamin D. Philpot, and Mark J. Zylka
Network dynamics of the brain and influence of the epileptic seizure onset zone
Samuel P. Burns, Sabato Santaniello, Robert B. Yaffe, Christophe C. Jouny, Nathan E. Crone, Gregory K. Bergey, William S. Anderson, and Sridevi V. Sarma
Physiology
Syndecan 4 is required for endothelial alignment in flow and atheroprotective signaling
Nicolas Baeyens, Mary Jo Mulligan-Kehoe, Federico Corti, David D. Simon, Tyler D. Ross, John M. Rhodes, Thomas Z. Wang, Cecile O. Mejean, Michael Simons, Jay Humphrey, and Martin A. Schwartz
Impact of circadian misalignment on energy metabolism during simulated nightshift work
Andrew W. McHill, Edward L. Melanson, Janine Higgins, Elizabeth Connick, Thomas M. Moehlman, Ellen R. Stothard, and Kenneth P. Wright Jr.
Psychological and Cognitive Sciences
Ethnic diversity deflates price bubbles Open Access Article
Sheen S. Levine, Evan P. Apfelbaum, Mark Bernard, Valerie L. Bartelt, Edward J. Zajac, and David Stark
Reward eliminates retrieval-induced forgetting
Hisato Imai, Dongho Kim, Yuka Sasaki, and Takeo Watanabe
Harm to others outweighs harm to self in moral decision making Open Access Article
Molly J. Crockett, Zeb Kurth-Nelson, Jenifer Z. Siegel, Peter Dayan, and Raymond J. Dolan
Mapping the unconscious maintenance of a lost first language
Lara J. Pierce, Denise Klein, Jen-Kai Chen, Audrey Delcenserie, and Fred Genesee
Systems Biology

Corrections
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Inaugural Article
Classic
Cozzarelli Prize Winner
Front Matter

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