Fwd: PNAS Early Edition for 11 Jun 2015

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Proceedings of the National Academy of Sciences Early Edition articles for 11 June 2015 Letters (Online Only) Reprogramming of B cell acute lymphoblastic leukemia cells: Do we need to shoot a moving target? Karel Fišer, Lucie Slámová, Jean-Pierre Bourquin, Jan Trka, Jan Starý, Ondřej Hrušák, and Ester Mejstříková Reply to Fišer et al.: Myeloid reprogramming of Ph+ B-ALL: A potential therapeutic strategy Ravindra Majeti, Christopher Dove, and James Scott McClellan Environment drives forage fish productivity Cody S. Szuwalski and Ray Hilborn Reply to Szuwalski and Hilborn: Forage fish require an ecosystem approach Timothy E. Essington, Margaret C. Siple, Emma E. Hodgson, Laura E. Koehn, Pamela E. Moriarty, Kiva L. Oken, and Christine C. Stawitz Commentaries Unconscious and conscious mediation of analgesia and hyperalgesia Donald D. Price Scrambled and not-so-tiny genomes of fungal endosymbionts Chih-Horng Kuo Estimating the global number of tropical tree species, and Fisher's paradox Stephen P. Hubbell Physical Sciences Applied Physical Sciences Broadband surface-wave transformation cloak Su Xu, Hongyi Xu, Hanhong Gao, Yuyu Jiang, Faxin Yu, John D. Joannopoulos, Marin Soljačić, Hongsheng Chen, Handong Sun, and Baile Zhang Selective buckling via states of self-stress in topological metamaterials Jayson Paulose, Anne S. Meeussen, and Vincenzo Vitelli Chemistry Identification of a triplet pair intermediate in singlet exciton fission in solution Hannah L. Stern, Andrew J. Musser, Simon Gelinas, Patrick Parkinson, Laura M. Herz, Matthew J. Bruzek, John Anthony, Richard H. Friend, and Brian J. Walker Novel pathways for fuels and lubricants from biomass optimized using life-cycle greenhouse gas assessment  Madhesan Balakrishnan, Eric R. Sacia, Sanil Sreekumar, Gorkem Gunbas, Amit A. Gokhale, Corinne D. Scown, F. Dean Toste, and Alexis T. Bell High-capacity electrode materials for rechargeable lithium batteries: Li3NbO4-based system with cation-disordered rocksalt structure Naoaki Yabuuchi, Mitsue Takeuchi, Masanobu Nakayama, Hiromasa Shiiba, Masahiro Ogawa, Keisuke Nakayama, Toshiaki Ohta, Daisuke Endo, Tetsuya Ozaki, Tokuo Inamasu, Kei Sato, and Shinichi Komaba Computer Sciences Predicting visual acuity from the structure of visual cortex Shyam Srinivasan, C. Nikoosh Carlo, and Charles F. Stevens Earth, Atmospheric, and Planetary Sciences Pathways for abiotic organic synthesis at submarine hydrothermal fields  Jill M. McDermott, Jeffrey S. Seewald, Christopher R. German, and Sean P. Sylva Late Oligocene–early Miocene birth of the Taklimakan Desert Hongbo Zheng, Xiaochun Wei, Ryuji Tada, Peter D. Clift, Bin Wang, Fred Jourdan, Ping Wang, and Mengying He Reevaluating carbon fluxes in subduction zones, what goes down, mostly comes up   Peter B. Kelemen and Craig E. Manning Engineering Generic, phenomenological, on-the-fly renormalized repulsion model for self-limited organization of terminal supraparticle assemblies Trung Dac Nguyen, Benjamin A. Schultz, Nicholas A. Kotov, and Sharon C. Glotzer Long-circulating siRNA nanoparticles for validating Prohibitin1-targeted non-small cell lung cancer treatment Xi Zhu, Yingjie Xu, Luisa M. Solis, Wei Tao, Liangzhe Wang, Carmen Behrens, Xiaoyang Xu, Lili Zhao, Danny Liu, Jun Wu, Ning Zhang, Ignacio I. Wistuba, Omid C. Farokhzad, Bruce R. Zetter, and Jinjun Shi Environmental Sciences A simple nutrient-dependence mechanism for predicting the stoichiometry of marine ecosystems Eric D. Galbraith and Adam C. Martiny Physics Synthesis of lithium polyhydrides above 130 GPa at 300 K Charles Pépin, Paul Loubeyre, Florent Occelli, and Paul Dumas Statistics Cross-correlations of American baby names Paolo Barucca, Jacopo Rocchi, Enzo Marinari, Giorgio Parisi, and Federico Ricci-Tersenghi Fundamental limits on the accuracy of demographic inference based on the sample frequency spectrum Jonathan Terhorst and Yun S. Song Social Sciences Psychological and Cognitive Sciences Spatial gradient in value representation along the medial prefrontal cortex reflects individual differences in prosociality  Sunhae Sul, Philippe N. Tobler, Grit Hein, Susanne Leiberg, Daehyun Jung, Ernst Fehr, and Hackjin Kim Social Sciences Cross-correlations of American baby names Paolo Barucca, Jacopo Rocchi, Enzo Marinari, Giorgio Parisi, and Federico Ricci-Tersenghi Biological Sciences Agricultural Sciences Tenebrionid secretions and a fungal benzoquinone oxidoreductase form competing components of an arms race between a host and pathogen Nicolás Pedrini, Almudena Ortiz-Urquiza, Carla Huarte-Bonnet, Yanhua Fan, M. Patricia Juárez, and Nemat O. Keyhani Applied Biological Sciences Single-molecule analysis reveals widespread structural variation in multiple myeloma  Aditya Gupta, Michael Place, Steven Goldstein, Deepayan Sarkar, Shiguo Zhou, Konstantinos Potamousis, Jaehyup Kim, Claire Flanagan, Yang Li, Michael A. Newton, Natalie S. Callander, Peiman Hematti, Emery H. Bresnick, Jian Ma, Fotis Asimakopoulos, and David C. Schwartz Biochemistry Empirical inference of circuitry and plasticity in a kinase signaling network  Edmund H. Wilkes, Camille Terfve, John G. Gribben, Julio Saez-Rodriguez, and Pedro Rodriguez Cutillas Essential role of the cytochrome P450 CYP4F22 in the production of acylceramide, the key lipid for skin permeability barrier formation Yusuke Ohno, Shota Nakamichi, Aya Ohkuni, Nozomi Kamiyama, Ayano Naoe, Hisashi Tsujimura, Urara Yokose, Kazumitsu Sugiura, Junko Ishikawa, Masashi Akiyama, and Akio Kihara Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer Satoshi Watanabe, Takumi Kawashima, Yuichi Nishitani, Tamotsu Kanai, Takehiko Wada, Kenji Inaba, Haruyuki Atomi, Tadayuki Imanaka, and Kunio Miki Conserved SMP domains of the ERMES complex bind phospholipids and mediate tether assembly Andrew P. AhYoung, Jiansen Jiang, Jiang Zhang, Xuan Khoi Dang, Joseph A. Loo, Z. Hong Zhou, and Pascal F. Egea Cytochrome cbb3 of Thioalkalivibrio is a Na+-pumping cytochrome oxidase Maria S. Muntyan, Dmitry A. Cherepanov, Anssi M. Malinen, Dmitry A. Bloch, Dimitry Y. Sorokin, Inna I. Severina, Tatiana V. Ivashina, Reijo Lahti, Gerard Muyzer, and Vladimir P. Skulachev Regulation by a chaperone improves substrate selectivity during cotranslational protein targeting Aileen Ariosa, Jae Ho Lee, Shuai Wang, Ishu Saraogi, and Shu-ou Shan Conformational processing of oncogenic v-Src kinase by the molecular chaperone Hsp90  Edgar E. Boczek, Lasse G. Reefschläger, Marco Dehling, Tobias J. Struller, Elisabeth Häusler, Andreas Seidl, Ville R. I. Kaila, and Johannes Buchner Phosphoregulatory protein 14-3-3 facilitates SAC1 transport from the endoplasmic reticulum Kanika Bajaj Pahuja, Jinzhi Wang, Anastasia Blagoveshchenskaya, Lillian Lim, M. S. Madhusudhan, Peter Mayinger, and Randy Schekman Retro-translocation of mitochondrial intermembrane space proteins  Piotr Bragoszewski, Michal Wasilewski, Paulina Sakowska, Agnieszka Gornicka, Lena Böttinger, Jian Qiu, Nils Wiedemann, and Agnieszka Chacinska Leinamycin E1 acting as an anticancer prodrug activated by reactive oxygen species Sheng-Xiong Huang, Bong-Sik Yun, Ming Ma, Hirak S. Basu, Dawn R. Church, Gudrun Ingenhorst, Yong Huang, Dong Yang, Jeremy R. Lohman, Gong-Li Tang, Jianhua Ju, Tao Liu, George Wilding, and Ben Shen Biophysics and Computational Biology Gate-controlled proton diffusion and protonation-induced ratchet motion in the stator of the bacterial flagellar motor  Yasutaka Nishihara and Akio Kitao Structural basis for mutation-induced destabilization of profilin 1 in ALS Sivakumar Boopathy, Tania V. Silvas, Maeve Tischbein, Silvia Jansen, Shivender M. Shandilya, Jill A. Zitzewitz, John E. Landers, Bruce L. Goode, Celia A. Schiffer, and Daryl A. Bosco Molecular diffusion in the human nail measured by stimulated Raman scattering microscopy Wing Sin Chiu, Natalie A. Belsey, Natalie L. Garrett, Julian Moger, M. Begoña Delgado-Charro, and Richard H. Guy Mechanochemical tuning of myosin-I by the N-terminal region Michael J. Greenberg, Tianming Lin, Henry Shuman, and E. Michael Ostap High-resolution helix orientation in actin-bound myosin determined with a bifunctional spin label Benjamin P. Binder, Sinziana Cornea, Andrew R. Thompson, Rebecca J. Moen, and David D. Thomas Cooperative folding of a polytopic α-helical membrane protein involves a compact N-terminal nucleus and nonnative loops Wojciech Paslawski, Ove K. Lillelund, Julie Veje Kristensen, Nicholas P. Schafer, Rosanna P. Baker, Sinisa Urban, and Daniel E. Otzen Inference of transcriptional regulation in cancers Peng Jiang, Matthew L. Freedman, Jun S. Liu, and Xiaole Shirley Liu Cell Biology TLR4 has a TP53-dependent dual role in regulating breast cancer cell growth  Svasti Haricharan and Powel Brown BMP9 and BMP10 are necessary for proper closure of the ductus arteriosus Sandrine Levet, Marie Ouarné, Delphine Ciais, Charles Coutton, Mariela Subileau, Christine Mallet, Nicolas Ricard, Marie Bidart, Thierry Debillon, Francesca Faravelli, Caroline Rooryck, Jean-Jacques Feige, Emmanuelle Tillet, and Sabine Bailly Transcriptional modulator ZBED6 affects cell cycle and growth of human colorectal cancer cells  Muhammad Akhtar Ali, Shady Younis, Ola Wallerman, Rajesh Gupta, Leif Andersson, and Tobias Sjöblom Ecology Biodiversity inhibits parasites: Broad evidence for the dilution effect David J. Civitello, Jeremy Cohen, Hiba Fatima, Neal T. Halstead, Josue Liriano, Taegan A. McMahon, C. Nicole Ortega, Erin Louise Sauer, Tanya Sehgal, Suzanne Young, and Jason R. Rohr Mass extinction in poorly known taxa  Claire Régnier, Guillaume Achaz, Amaury Lambert, Robert H. Cowie, Philippe Bouchet, and Benoît Fontaine Climate mediates hypoxic stress on fish diversity and nursery function at the land–sea interface Brent B. Hughes, Matthew D. Levey, Monique C. Fountain, Aaron B. Carlisle, Francisco P. Chavez, and Mary G. Gleason Environmental Sciences SAR11 lipid renovation in response to phosphate starvation Paul Carini, Benjamin A. S. Van Mooy, J. Cameron Thrash, Angelicque White, Yanlin Zhao, Emily O. Campbell, Helen F. Fredricks, and Stephen J. Giovannoni A simple nutrient-dependence mechanism for predicting the stoichiometry of marine ecosystems Eric D. Galbraith and Adam C. Martiny Evolution Fundamental limits on the accuracy of demographic inference based on the sample frequency spectrum Jonathan Terhorst and Yun S. Song Contingency and entrenchment in protein evolution under purifying selection Premal Shah, David M. McCandlish, and Joshua B. Plotkin Genetics MiR-204 is responsible for inherited retinal dystrophy associated with ocular coloboma Ivan Conte, Kristen D. Hadfield, Sara Barbato, Sabrina Carrella, Mariateresa Pizzo, Rajeshwari S. Bhat, Annamaria Carissimo, Marianthi Karali, Louise F. Porter, Jill Urquhart, Sofie Hateley, James O'Sullivan, Forbes D. C. Manson, Stephan C. F. Neuhauss, Sandro Banfi, and Graeme C. M. Black Immunology and Inflammation Inflammation negatively regulates FOXP3 and regulatory T-cell function via DBC1 Yayi Gao, Jiayou Tang, Weiqian Chen, Qiang Li, Jia Nie, Fang Lin, Qingsi Wu, Zuojia Chen, Zhimei Gao, Huimin Fan, Andy Tsun, Jijia Shen, Guihua Chen, Zhongmin Liu, Zhenkun Lou, Nancy J. Olsen, Song Guo Zheng, and Bin Li TOE1 is an inhibitor of HIV-1 replication with cell-penetrating capability Sabina Sperandio, Corinne Barat, Miguel A. Cabrita, Ana Gargaun, Maxim V. Berezovski, Michel J. Tremblay, and Ian de Belle Disregulated expression of the transcription factor ThPOK during T-cell development leads to high incidence of T-cell lymphomas Hyung-Ok Lee, Xiao He, Jayati Mookerjee-Basu, Dai Zhongping, Xiang Hua, Emmanuelle Nicolas, Maria Luisa Sulis, Adolfo A. Ferrando, Joseph R. Testa, and Dietmar J. Kappes Pre-TCR ligand binding impacts thymocyte development before αβTCR expression Robert J. Mallis, Ke Bai, Haribabu Arthanari, Rebecca E. Hussey, Maris Handley, Zhenhai Li, Loice Chingozha, Jonathan S. Duke-Cohan, Hang Lu, Jia-Huai Wang, Cheng Zhu, Gerhard Wagner, and Ellis L. Reinherz Medical Sciences Long-circulating siRNA nanoparticles for validating Prohibitin1-targeted non-small cell lung cancer treatment Xi Zhu, Yingjie Xu, Luisa M. Solis, Wei Tao, Liangzhe Wang, Carmen Behrens, Xiaoyang Xu, Lili Zhao, Danny Liu, Jun Wu, Ning Zhang, Ignacio I. Wistuba, Omid C. Farokhzad, Bruce R. Zetter, and Jinjun Shi Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling  Johan A. den Boon, Dohun Pyeon, Sophia S. Wang, Mark Horswill, Mark Schiffman, Mark Sherman, Rosemary E. Zuna, Zhishi Wang, Stephen M. Hewitt, Rachel Pearson, Meghan Schott, Lisa Chung, Qiuling He, Paul Lambert, Joan Walker, Michael A. Newton, Nicolas Wentzensen, and Paul Ahlquist Microbiology Relationship of the quaternary structure of human secretory IgA to neutralization of influenza virus  Tadaki Suzuki, Akira Kawaguchi, Akira Ainai, Shin-ichi Tamura, Ryo Ito, Pretty Multihartina, Vivi Setiawaty, Krisna Nur Andriana Pangesti, Takato Odagiri, Masato Tashiro, and Hideki Hasegawa Bioimage analysis of Shigella infection reveals targeting of colonic crypts  Ellen T. Arena, Francois-Xavier Campbell-Valois, Jean-Yves Tinevez, Giulia Nigro, Martin Sachse, Maryse Moya-Nilges, Katharina Nothelfer, Benoit Marteyn, Spencer L. Shorte, and Philippe J. Sansonetti Transmission potential of Rickettsia felis infection by Anopheles gambiae mosquitoes  Constentin Dieme, Yassina Bechah, Cristina Socolovschi, Gilles Audoly, Jean-Michel Berenger, Ousmane Faye, Didier Raoult, and Philippe Parola Extracellular ATP induces the rapid release of HIV-1 from virus containing compartments of human macrophages Francesca Graziano, Marion Desdouits, Livia Garzetti, Paola Podini, Massimo Alfano, Anna Rubartelli, Roberto Furlan, Philippe Benaroch, and Guido Poli Protein synthesis during cellular quiescence is inhibited by phosphorylation of a translational elongation factor Sandro F. F. Pereira, Ruben L. Gonzalez Jr., and Jonathan Dworkin RNASEK is required for internalization of diverse acid-dependent viruses Brent A. Hackett, Ari Yasunaga, Debasis Panda, Michael A. Tartell, Kaycie C. Hopkins, Scott E. Hensley, and Sara Cherry Host lysozyme-mediated lysis of Lactococcus lactis facilitates delivery of colitis-attenuating superoxide dismutase to inflamed colons  Sonia A. Ballal, Patrick Veiga, Kathrin Fenn, Monia Michaud, Jason H. Kim, Carey Ann Gallini, Jonathan N. Glickman, Gaëlle Quéré, Peggy Garault, Chloé Béal, Muriel Derrien, Pascal Courtin, Saulius Kulakauskas, Marie-Pierre Chapot-Chartier, Johan van Hylckama Vlieg, and Wendy S. Garrett Neuroscience GABAB receptor deficiency causes failure of neuronal homeostasis in hippocampal networks  Irena Vertkin, Boaz Styr, Edden Slomowitz, Nir Ofir, Ilana Shapira, David Berner, Tatiana Fedorova, Tal Laviv, Noa Barak-Broner, Dafna Greitzer-Antes, Martin Gassmann, Bernhard Bettler, Ilana Lotan, and Inna Slutsky Amelioration of toxicity in neuronal models of amyotrophic lateral sclerosis by hUPF1 Sami J. Barmada, Shulin Ju, Arpana Arjun, Anthony Batarse, Hilary C. Archbold, Daniel Peisach, Xingli Li, Yuxi Zhang, Elizabeth M. H. Tank, Haiyan Qiu, Eric J. Huang, Dagmar Ringe, Gregory A. Petsko, and Steven Finkbeiner Glycosphingolipids are modulators of disease pathogenesis in amyotrophic lateral sclerosis  James C. Dodge, Christopher M. Treleaven, Joshua Pacheco, Samantha Cooper, Channa Bao, Marissa Abraham, Mandy Cromwell, S. Pablo Sardi, Wei-Lien Chuang, Richard L. Sidman, Seng H. Cheng, and Lamya S. Shihabuddin Caffeine acts through neuronal adenosine A2A receptors to prevent mood and memory dysfunction triggered by chronic stress Manuella P. Kaster, Nuno J. Machado, Henrique B. Silva, Ana Nunes, Ana Paula Ardais, Magda Santana, Younis Baqi, Christa E. Müller, Ana Lúcia S. Rodrigues, Lisiane O. Porciúncula, Jiang Fan Chen, Ângelo R. Tomé, Paula Agostinho, Paula M. Canas, and Rodrigo A. Cunha Altered thalamocortical rhythmicity and connectivity in mice lacking CaV3.1 T-type Ca2+ channels in unconsciousness  Soonwook Choi, Eunah Yu, Seongwon Lee, and Rodolfo R. Llinás Optogenetic stimulation of infralimbic PFC reproduces ketamine's rapid and sustained antidepressant actions Manabu Fuchikami, Alexandra Thomas, Rongjian Liu, Eric S. Wohleb, Benjamin B. Land, Ralph J. DiLeone, George K. Aghajanian, and Ronald S. Duman Predicting visual acuity from the structure of visual cortex Shyam Srinivasan, C. Nikoosh Carlo, and Charles F. Stevens Neurons selective to the number of visual items in the corvid songbird endbrain Helen M. Ditz and Andreas Nieder Transgenic songbirds with suppressed or enhanced activity of CREB transcription factor Kentaro Abe, Sumiko Matsui, and Dai Watanabe Physiology Calcium activates the light-dependent conductance in melanopsin-expressing photoreceptors of amphioxus Gabriel Peinado, Tomás Osorno, María del Pilar Gomez, and Enrico Nasi Impaired mitochondrial fat oxidation induces adaptive remodeling of muscle metabolism Shawna E. Wicks, Bolormaa Vandanmagsar, Kimberly R. Haynie, Scott E. Fuller, Jaycob D. Warfel, Jacqueline M. Stephens, Miao Wang, Xianlin Han, Jingying Zhang, Robert C. Noland, and Randall L. Mynatt Psychological and Cognitive Sciences Establishing task- and modality-dependent dissociations between the semantic and default mode networks Gina F. Humphreys, Paul Hoffman, Maya Visser, Richard J. Binney, and Matthew A. Lambon Ralph Children with autism spectrum disorder show reduced adaptation to number  Marco Turi, David C. Burr, Roberta Igliozzi, David Aagten-Murphy, Filippo Muratori, and Elizabeth Pellicano Spatial gradient in value representation along the medial prefrontal cortex reflects individual differences in prosociality  Sunhae Sul, Philippe N. Tobler, Grit Hein, Susanne Leiberg, Daehyun Jung, Ernst Fehr, and Hackjin Kim Sustainability Science Novel pathways for fuels and lubricants from biomass optimized using life-cycle greenhouse gas assessment  Madhesan Balakrishnan, Eric R. Sacia, Sanil Sreekumar, Gorkem Gunbas, Amit A. Gokhale, Corinne D. Scown, F. Dean Toste, and Alexis T. Bell Corrections Correction for Campbell et al., Humoral response to a viral glycan correlates with survival on PROSTVAC-VF Correction for Stoveken et al., Adhesion G protein-coupled receptors are activated by exposure of a cryptic tethered agonist Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (....) Copyright © 2015 by the National Academy of Sciences