Fwd: PNAS Table of Contents for 4 November 2014; Vol. 111, No. 44

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Subject: PNAS Table of Contents for 4 November 2014; Vol. 111, No. 44
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Proceedings of the National Academy of Sciences 4 November 2014; Vol. 111, No. 44 This Week in PNAS In This Issue Core Concepts Core Concepts: Quasiparticle  Stephen Ornes A brief introduction to emerging topics in science. Commentaries Butterfly-inspired photonics reverse diffraction color sequence Michael H. Bartl Migrant solution to the anammox mystery Cecelia C. S. Hannides Elucidating marine virus ecology through a unified heartbeat Kay D. Bidle Algae hold clues to eukaryotic origins of plant phytochromes Sarah Mathews Waking sleeping algal cells Xiaobo Li, James G. Umen, and Martin C. Jonikas PNAS Plus Significance Statements PNAS Plus Significance Statements Brief statements written by the authors about the significance of their papers. Perspective Antibody persistence and T-cell balance: Two key factors confronting HIV vaccine development  George K. Lewis, Anthony L. DeVico, and Robert C. Gallo Physical Sciences Applied Physical Sciences Bioinspired micrograting arrays mimicking the reverse color diffraction elements evolved by the butterfly Pierella luna   Grant England, Mathias Kolle, Philseok Kim, Mughees Khan, Philip Muñoz, Eric Mazur, and Joanna Aizenberg Volta potential phase plate for in-focus phase contrast transmission electron microscopy  Radostin Danev, Bart Buijsse, Maryam Khoshouei, Jürgen M. Plitzko, and Wolfgang Baumeister Chemistry Direct in situ observations of single Fe atom catalytic processes and anomalous diffusion at graphene edges Jiong Zhao, Qingming Deng, Stanislav M. Avdoshenko, Lei Fu, Jürgen Eckert, and Mark H. Rümmeli Computer Sciences Transplantation of prokaryotic two-component signaling pathways into mammalian cells Jonathan Hansen, Erik Mailand, Krishna Kumar Swaminathan, Joerg Schreiber, Bartolomeo Angelici, and Yaakov Benenson Earth, Atmospheric, and Planetary Sciences Long-term relationships among pesticide applications, mobility, and soil erosion in a vineyard watershed Pierre Sabatier, Jérôme Poulenard, Bernard Fanget, Jean-Louis Reyss, Anne-Lise Develle, Bruno Wilhelm, Estelle Ployon, Cécile Pignol, Emmanuel Naffrechoux, Jean-Marcel Dorioz, Bernard Montuelle, and Fabien Arnaud Enhancement of anammox by the excretion of diel vertical migrators  Daniele Bianchi, Andrew R. Babbin, and Eric D. Galbraith Strong influence of El Niño Southern Oscillation on flood risk around the world  Philip J. Ward, Brenden Jongman, Matti Kummu, Michael D. Dettinger, Frederiek C. Sperna Weiland, and Hessel C. Winsemius Direct numerical simulations of aeolian sand ripples Orencio Durán, Philippe Claudin, and Bruno Andreotti Ultra-high-resolution paleoenvironmental records via direct laser-based analysis of lipid biomarkers in sediment core samples Lars Wörmer, Marcus Elvert, Jens Fuchser, Julius Sebastian Lipp, Pier Luigi Buttigieg, Matthias Zabel, and Kai-Uwe Hinrichs Environmental Sciences Marine algae and land plants share conserved phytochrome signaling systems   Deqiang Duanmu, Charles Bachy, Sebastian Sudek, Chee-Hong Wong, Valeria Jiménez, Nathan C. Rockwell, Shelley S. Martin, Chew Yee Ngan, Emily N. Reistetter, Marijke J. van Baren, Dana C. Price, Chia-Lin Wei, Adrian Reyes-Prieto, J. Clark Lagarias, and Alexandra Z. Worden Statistics Time-variant clustering model for understanding cell fate decisions Wei Huang, Xiaoyi Cao, Fernando H. Biase, Pengfei Yu, and Sheng Zhong Learning regulatory programs by threshold SVD regression  Xin Ma, Luo Xiao, and Wing Hung Wong Approximation of the expected value of the harmonic mean and some applications Calyampudi Radhakrishna Rao, Xiaoping Shi, and Yuehua Wu Social Sciences Environmental Sciences Strong influence of El Niño Southern Oscillation on flood risk around the world  Philip J. Ward, Brenden Jongman, Matti Kummu, Michael D. Dettinger, Frederiek C. Sperna Weiland, and Hessel C. Winsemius Psychological and Cognitive Sciences Motive attribution asymmetry for love vs. hate drives intractable conflict Adam Waytz, Liane L. Young, and Jeremy Ginges Social Sciences Disruption of multisystem responses to stress in type 2 diabetes: Investigating the dynamics of allostatic load  Andrew Steptoe, Ruth A. Hackett, Antonio I. Lazzarino, Sophie Bostock, Roberto La Marca, Livia A. Carvalho, and Mark Hamer Biological Sciences Agricultural Sciences Long-term relationships among pesticide applications, mobility, and soil erosion in a vineyard watershed Pierre Sabatier, Jérôme Poulenard, Bernard Fanget, Jean-Louis Reyss, Anne-Lise Develle, Bruno Wilhelm, Estelle Ployon, Cécile Pignol, Emmanuel Naffrechoux, Jean-Marcel Dorioz, Bernard Montuelle, and Fabien Arnaud A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain  Won-Yong Song, Tomohiro Yamaki, Naoki Yamaji, Donghwi Ko, Ki-Hong Jung, Miho Fujii-Kashino, Gynheung An, Enrico Martinoia, Youngsook Lee, and Jian Feng Ma Applied Biological Sciences Bioinspired micrograting arrays mimicking the reverse color diffraction elements evolved by the butterfly Pierella luna   Grant England, Mathias Kolle, Philseok Kim, Mughees Khan, Philip Muñoz, Eric Mazur, and Joanna Aizenberg Transplantation of prokaryotic two-component signaling pathways into mammalian cells Jonathan Hansen, Erik Mailand, Krishna Kumar Swaminathan, Joerg Schreiber, Bartolomeo Angelici, and Yaakov Benenson Baculovirus resistance in codling moth is virus isolate-dependent and the consequence of a mutation in viral gene pe38 Manuela M. Gebhardt, Karolin E. Eberle, Pit Radtke, and Johannes A. Jehle Engineering of an epoxide hydrolase for efficient bioresolution of bulky pharmaco substrates Xu-Dong Kong, Shuguang Yuan, Lin Li, She Chen, Jian-He Xu, and Jiahai Zhou Biochemistry Mitochondrial COQ9 is a lipid-binding protein that associates with COQ7 to enable coenzyme Q biosynthesis Danielle C. Lohman, Farhad Forouhar, Emily T. Beebe, Matthew S. Stefely, Catherine E. Minogue, Arne Ulbrich, Jonathan A. Stefely, Shravan Sukumar, Marta Luna-Sánchez, Adam Jochem, Scott Lew, Jayaraman Seetharaman, Rong Xiao, Huang Wang, Michael S. Westphall, Russell L. Wrobel, John K. Everett, Julie C. Mitchell, Luis C. López, Joshua J. Coon, Liang Tong, and David J. Pagliarini Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells   Mariano Alló, Eneritz Agirre, Sergey Bessonov, Paola Bertucci, Luciana Gómez Acuña, Valeria Buggiano, Nicolás Bellora, Babita Singh, Ezequiel Petrillo, Matías Blaustein, Belén Miñana, Gwendal Dujardin, Berta Pozzi, Federico Pelisch, Elías Bechara, Dmitry E. Agafonov, Anabella Srebrow, Reinhard Lührmann, Juan Valcárcel, Eduardo Eyras, and Alberto R. Kornblihtt Xylose phosphorylation functions as a molecular switch to regulate proteoglycan biosynthesis  Jianzhong Wen, Junyu Xiao, Meghdad Rahdar, Biswa P. Choudhury, Jixin Cui, Gregory S. Taylor, Jeffrey D. Esko, and Jack E. Dixon Proteolytic control of neurite outgrowth inhibitor NOGO-A by the cAMP/PKA pathway Maria Sepe, Luca Lignitto, Monia Porpora, Rossella Delle Donne, Laura Rinaldi, Giuseppe Belgianni, Gianna Colucci, Ornella Cuomo, Davide Viggiano, Antonella Scorziello, Corrado Garbi, Lucio Annunziato, and Antonio Feliciello Kinetic evidence against partitioning of the ubiquinone pool and the catalytic relevance of respiratory-chain supercomplexes James N. Blaza, Riccardo Serreli, Andrew J. Y. Jones, Khairunnisa Mohammed, and Judy Hirst Deorphanization of the human leukocyte tyrosine kinase (LTK) receptor by a signaling screen of the extracellular proteome  Hongbing Zhang, Lily I. Pao, Aileen Zhou, Arthur D. Brace, Robert Halenbeck, Amy W. Hsu, Thomas L. Bray, Kevin Hestir, Elizabeth Bosch, Ernestine Lee, Gang Wang, Haixia Liu, Brian R. Wong, W. Michael Kavanaugh, and Lewis T. Williams An intramolecular lock facilitates folding and stabilizes the tertiary structure of Streptococcus mutans adhesin P1 Kyle P. Heim, Paula J. Crowley, Joanna R. Long, Shweta Kailasan, Robert McKenna, and L. Jeannine Brady Biophysics and Computational Biology Volta potential phase plate for in-focus phase contrast transmission electron microscopy  Radostin Danev, Bart Buijsse, Maryam Khoshouei, Jürgen M. Plitzko, and Wolfgang Baumeister Switching dynamics of the bacterial flagellar motor near zero load Fangbin Wang, Junhua Yuan, and Howard C. Berg Cell Biology VEGF-induced neoangiogenesis is mediated by NAADP and two-pore channel-2–dependent Ca2+ signaling Annarita Favia, Marianna Desideri, Guido Gambara, Alessio D'Alessio, Margarida Ruas, Bianca Esposito, Donatella Del Bufalo, John Parrington, Elio Ziparo, Fioretta Palombi, Antony Galione, and Antonio Filippini WWOX, the common fragile site FRA16D gene product, regulates ATM activation and the DNA damage response Mohammad Abu-Odeh, Zaidoun Salah, Christoph Herbel, Thomas G. Hofmann, and Rami I. Aqeilan Single-cell analyses of transcriptional heterogeneity during drug tolerance transition in cancer cells by RNA sequencing Mei-Chong Wendy Lee, Fernando J. Lopez-Diaz, Shahid Yar Khan, Muhammad Akram Tariq, Yelena Dayn, Charles Joseph Vaske, Amie J. Radenbaugh, Hyunsung John Kim, Beverly M. Emerson, and Nader Pourmand G protein-coupled receptor 56 regulates mechanical overload-induced muscle hypertrophy James P. White, Christiane D. Wrann, Rajesh R. Rao, Sreekumaran K. Nair, Mark P. Jedrychowski, Jae-Sung You, Vicente Martínez-Redondo, Steven P. Gygi, Jorge L. Ruas, Troy A. Hornberger, Zhidan Wu, David J. Glass, Xianhua Piao, and Bruce M. Spiegelman Cog5–Cog7 crystal structure reveals interactions essential for the function of a multisubunit tethering complex Jun Yong Ha, Irina D. Pokrovskaya, Leslie K. Climer, Gregory R. Shimamura, Tetyana Kudlyk, Philip D. Jeffrey, Vladimir V. Lupashin, and Frederick M. Hughson Developmental Biology A nontranscriptional role for Oct4 in the regulation of mitotic entry Rui Zhao, Richard W. Deibler, Paul H. Lerou, Andrea Ballabeni, Garrett C. Heffner, Patrick Cahan, Juli J. Unternaehrer, Marc W. Kirschner, and George Q. Daley Environmental Sciences Enhancement of anammox by the excretion of diel vertical migrators  Daniele Bianchi, Andrew R. Babbin, and Eric D. Galbraith Impact of mesophyll diffusion on estimated global land CO2 fertilization Ying Sun, Lianhong Gu, Robert E. Dickinson, Richard J. Norby, Stephen G. Pallardy, and Forrest M. Hoffman Evolution Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid  M. Sabrina Pankey, Vladimir N. Minin, Greg C. Imholte, Marc A. Suchard, and Todd H. Oakley Genetics Genomic and transcriptomic analyses of the medicinal fungus Antrodia cinnamomea for its metabolite biosynthesis and sexual development Mei-Yeh Jade Lu, Wen-Lang Fan, Woei-Fuh Wang, Tingchun Chen, Yi-Ching Tang, Fang-Hua Chu, Tun-Tschu Chang, Sheng-Yang Wang, Meng-yun Li, Yi-Hua Chen, Ze-Shiang Lin, Kai-Jung Yang, Shih-May Chen, Yu-Chuan Teng, Yan-Liang Lin, Jei-Fu Shaw, Ting-Fang Wang, and Wen-Hsiung Li Immunology and Inflammation Identification of 14-series sulfido-conjugated mediators that promote resolution of infection and organ protection Jesmond Dalli, Nan Chiang, and Charles N. Serhan Role of disease-associated tolerance in infectious superspreaders Smita Gopinath, Joshua S. Lichtman, Donna M. Bouley, Joshua E. Elias, and Denise M. Monack Medical Sciences Disruption of multisystem responses to stress in type 2 diabetes: Investigating the dynamics of allostatic load  Andrew Steptoe, Ruth A. Hackett, Antonio I. Lazzarino, Sophie Bostock, Roberto La Marca, Livia A. Carvalho, and Mark Hamer Microbiology Interleukin 1 receptor-associated kinase 1 (IRAK1) mutation is a common, essential driver for Kaposi sarcoma herpesvirus lymphoma Dongmei Yang, Wuguo Chen, Jie Xiong, Carly J. Sherrod, David H. Henry, and Dirk P. Dittmer Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses   Eric G. Sakowski, Erik V. Munsell, Mara Hyatt, William Kress, Shannon J. Williamson, Daniel J. Nasko, Shawn W. Polson, and K. Eric Wommack Solution structures of Mengovirus Leader protein, its phosphorylated derivatives, and in complex with nuclear transport regulatory protein, RanGTPase Valjean R. Bacot-Davis, Jessica J. Ciomperlik, Holly A. Basta, Claudia C. Cornilescu, and Ann C. Palmenberg Potential antigenic explanation for atypical H1N1 infections among middle-aged adults during the 2013–2014 influenza season  Susanne L. Linderman, Benjamin S. Chambers, Seth J. Zost, Kaela Parkhouse, Yang Li, Christin Herrmann, Ali H. Ellebedy, Donald M. Carter, Sarah F. Andrews, Nai-Ying Zheng, Min Huang, Yunping Huang, Donna Strauss, Beth H. Shaz, Richard L. Hodinka, Gustavo Reyes-Terán, Ted M. Ross, Patrick C. Wilson, Rafi Ahmed, Jesse D. Bloom, and Scott E. Hensley Neuroscience Activity-dependent FUS dysregulation disrupts synaptic homeostasis  Chantelle F. Sephton, Amy A. Tang, Ashwinikumar Kulkarni, James West, Mieu Brooks, Jeremy J. Stubblefield, Yun Liu, Michael Q. Zhang, Carla B. Green, Kimberly M. Huber, Eric J. Huang, Joachim Herz, and Gang Yu The rare DAT coding variant Val559 perturbs DA neuron function, changes behavior, and alters in vivo responses to psychostimulants Marc A. Mergy, Raajaram Gowrishankar, Paul J. Gresch, Stephanie C. Gantz, John Williams, Gwynne L. Davis, C. Austin Wheeler, Gregg D. Stanwood, Maureen K. Hahn, and Randy D. Blakely Dopamine release from transplanted neural stem cells in Parkinsonian rat striatum in vivo Xinjiang Kang, Huadong Xu, Sasa Teng, Xiaoyu Zhang, Zijun Deng, Li Zhou, Panli Zuo, Bing Liu, Bin Liu, Qihui Wu, Li Wang, Meiqin Hu, Haiqiang Dou, Wei Liu, Feipeng Zhu, Qing Li, Shu Guo, Jingli Gu, Qian Lei, Jing Lü, Yu Mu, Mu Jin, Shirong Wang, Wei Jiang, Kun Liu, Changhe Wang, Wenlin Li, Kang Zhang, and Zhuan Zhou Physical exercise-induced hippocampal neurogenesis and antidepressant effects are mediated by the adipocyte hormone adiponectin  Suk Yu Yau, Ang Li, Ruby L. C. Hoo, Yick Pang Ching, Brian R. Christie, Tatia M. C. Lee, Aimin Xu, and Kwok-Fai So Neuroprotection and repair of 3′-blocking DNA ends by glaikit (gkt) encoding Drosophila tyrosyl-DNA phosphodiesterase 1 (TDP1) DongYu Guo, Thomas S. Dexheimer, Yves Pommier, and Howard A. Nash Uridine adenosine tetraphosphate is a novel neurogenic P2Y1 receptor activator in the gut Leonie Durnin, Sung Jin Hwang, Masaaki Kurahashi, Bernard T. Drumm, Sean M. Ward, Kent C. Sasse, Kenton M. Sanders, and Violeta N. Mutafova-Yambolieva Physiology Chemoselective tarantula toxins report voltage activation of wild-type ion channels in live cells Drew C. Tilley, Kenneth S. Eum, Sebastian Fletcher-Taylor, Daniel C. Austin, Christophe Dupré, Lilian A. Patrón, Rita L. Garcia, Kit Lam, Vladimir Yarov-Yarovoy, Bruce E. Cohen, and Jon T. Sack Plant Biology Marine algae and land plants share conserved phytochrome signaling systems   Deqiang Duanmu, Charles Bachy, Sebastian Sudek, Chee-Hong Wong, Valeria Jiménez, Nathan C. Rockwell, Shelley S. Martin, Chew Yee Ngan, Emily N. Reistetter, Marijke J. van Baren, Dana C. Price, Chia-Lin Wei, Adrian Reyes-Prieto, J. Clark Lagarias, and Alexandra Z. Worden The protein Compromised Hydrolysis of Triacylglycerols 7 (CHT7) acts as a repressor of cellular quiescence in Chlamydomonas Chia-Hong Tsai, Jaruswan Warakanont, Tomomi Takeuchi, Barb B. Sears, Eric R. Moellering, and Christoph Benning Compartmentalization of the protein repair machinery in photosynthetic membranes Sujith Puthiyaveetil, Onie Tsabari, Troy Lowry, Steven Lenhert, Robert R. Lewis, Ziv Reich, and Helmut Kirchhoff Psychological and Cognitive Sciences Memory reactivation during rest supports upcoming learning of related content Margaret L. Schlichting and Alison R. Preston Systems Biology Time-variant clustering model for understanding cell fate decisions Wei Huang, Xiaoyi Cao, Fernando H. Biase, Pengfei Yu, and Sheng Zhong Retraction Retraction for Nandakumar et al., Dominant suppression of inflammation by glycan-hydrolyzed IgG Correction Correction for Wenz et al., Increased muscle PGC-1α expression protects from sarcopenia and metabolic disease during aging Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (......) 425 Broadway St * Redwood City, CA 94063 * U.S.A. Copyright © 2014 by the National Academy of Sciences