Fwd: PNAS Early Edition for 5 Nov 2015

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Date: Thu, Nov 5, 2015 at 11:13 PM
Subject: PNAS Early Edition for 5 Nov 2015
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Proceedings of the National Academy of Sciences Early Edition articles for 5 November 2015 Retrospective Bill Paul: The heart of immunology Michael J. Lenardo and Louis M. Staudt Commentaries The ever-emerging complexity of α-toxin's interaction with host cells Ashira Lubkin and Victor J. Torres Structural and functional dynamics of photosynthetic antenna complexes Robert E. Blankenship Genetic architecture of key social trait differs significantly between primitive and advanced eusocial species Jürgen Gadau Impact of bed capacity on spatiotemporal shifts in Ebola transmission Jeffrey P. Townsend, Laura A. Skrip, and Alison P. Galvani Brønsted slopes based on single-molecule imaging data help to unveil the chemically coupled rotation in F1-ATPase Shayantani Mukherjee and Arieh Warshel Settling the debate on birth order and personality Rodica Ioana Damian and Brent W. Roberts Physical Sciences Applied Physical Sciences Direct force measurements reveal that protein Tau confers short-range attractions and isoform-dependent steric stabilization to microtubules Peter J. Chung, Myung Chul Choi, Herbert P. Miller, H. Eric Feinstein, Uri Raviv, Youli Li, Leslie Wilson, Stuart C. Feinstein, and Cyrus R. Safinya Path selection in the growth of rivers Yossi Cohen, Olivier Devauchelle, Hansjörg F. Seybold, Robert S. Yi, Piotr Szymczak, and Daniel H. Rothman Chemistry On artifacts in single-molecule force spectroscopy Pilar Cossio, Gerhard Hummer, and Attila Szabo Kinetics methods for clinical epidemiology problems Alexandru Dan Corlan and John Ross Single-molecule motions and interactions in live cells reveal target search dynamics in mismatch repair Yi Liao, Jeremy W. Schroeder, Burke Gao, Lyle A. Simmons, and Julie S. Biteen High-temperature in situ crystallographic observation of reversible gas sorption in impermeable organic cages  Seung Bin Baek, Dohyun Moon, Robert Graf, Woo Jong Cho, Sung Woo Park, Tae-Ung Yoon, Seung Joo Cho, In-Chul Hwang, Youn-Sang Bae, Hans W. Spiess, Hee Cheon Lee, and Kwang S. Kim Computer Sciences Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images  Duc Fehr, Harini Veeraraghavan, Andreas Wibmer, Tatsuo Gondo, Kazuhiro Matsumoto, Herbert Alberto Vargas, Evis Sala, Hedvig Hricak, and Joseph O. Deasy Earth, Atmospheric, and Planetary Sciences Atmospheric Ar and Ne returned from mantle depths to the Earth's surface by forearc recycling Suzanne L. Baldwin and J. P. Das Seasonal fluxes of carbonyl sulfide in a midlatitude forest Róisín Commane, Laura K. Meredith, Ian T. Baker, Joseph A. Berry, J. William Munger, Stephen A. Montzka, Pamela H. Templer, Stephanie M. Juice, Mark S. Zahniser, and Steven C. Wofsy Fate of MgSiO3 melts at core–mantle boundary conditions  Sylvain Petitgirard, Wim J. Malfait, Ryosuke Sinmyo, Ilya Kupenko, Louis Hennet, Dennis Harries, Thomas Dane, Manfred Burghammer, and Dave C. Rubie Formation and evolution of molecular products in α-pinene secondary organic aerosol Xuan Zhang, Renee C. McVay, Dan D. Huang, Nathan F. Dalleska, Bernard Aumont, Richard C. Flagan, and John H. Seinfeld Life and extinction of megafauna in the ice-age Arctic  Daniel H. Mann, Pamela Groves, Richard E. Reanier, Benjamin V. Gaglioti, Michael L. Kunz, and Beth Shapiro Engineering Stochastic electrotransport selectively enhances the transport of highly electromobile molecules Sung-Yon Kim, Jae Hun Cho, Evan Murray, Naveed Bakh, Heejin Choi, Kimberly Ohn, Luzdary Ruelas, Austin Hubbert, Meg McCue, Sara L. Vassallo, Philipp J. Keller, and Kwanghun Chung Ultrasensitive gas detection of large-area boron-doped graphene  Ruitao Lv, Gugang Chen, Qing Li, Amber McCreary, Andrés Botello-Méndez, S. V. Morozov, Liangbo Liang, Xavier Declerck, Nestor Perea-López, David A. Cullen, Simin Feng, Ana Laura Elías, Rodolfo Cruz-Silva, Kazunori Fujisawa, Morinobu Endo, Feiyu Kang, Jean-Christophe Charlier, Vincent Meunier, Minghu Pan, Avetik R. Harutyunyan, Konstantin S. Novoselov, and Mauricio Terrones Environmental Sciences Collapse of the West Antarctic Ice Sheet after local destabilization of the Amundsen Basin Johannes Feldmann and Anders Levermann Physics Bright circularly polarized soft X-ray high harmonics for X-ray magnetic circular dichroism  Tingting Fan, Patrik Grychtol, Ronny Knut, Carlos Hernández-García, Daniel D. Hickstein, Dmitriy Zusin, Christian Gentry, Franklin J. Dollar, Christopher A. Mancuso, Craig W. Hogle, Ofer Kfir, Dominik Legut, Karel Carva, Jennifer L. Ellis, Kevin M. Dorney, Cong Chen, Oleg G. Shpyrko, Eric E. Fullerton, Oren Cohen, Peter M. Oppeneer, Dejan B. Milošević, Andreas Becker, Agnieszka A. Jaroń-Becker, Tenio Popmintchev, Margaret M. Murnane, and Henry C. Kapteyn Filming the formation and fluctuation of skyrmion domains by cryo-Lorentz transmission electron microscopy  Jayaraman Rajeswari, Ping Huang, Giulia Fulvia Mancini, Yoshie Murooka, Tatiana Latychevskaia, Damien McGrouther, Marco Cantoni, Edoardo Baldini, Jonathan Stuart White, Arnaud Magrez, Thierry Giamarchi, Henrik Moodysson Rønnow, and Fabrizio Carbone Twisted photon entanglement through turbulent air across Vienna Mario Krenn, Johannes Handsteiner, Matthias Fink, Robert Fickler, and Anton Zeilinger The bioenergetic costs of a gene Michael Lynch and Georgi K. Marinov Teleportation of entanglement over 143 km Thomas Herbst, Thomas Scheidl, Matthias Fink, Johannes Handsteiner, Bernhard Wittmann, Rupert Ursin, and Anton Zeilinger Social Sciences Anthropology Transition to farming more likely for small, conservative groups with property rights, but increased productivity is not essential Elizabeth M. Gallagher, Stephen J. Shennan, and Mark G. Thomas Social Sciences Rising morbidity and mortality in midlife among white non-Hispanic Americans in the 21st century  Anne Case and Angus Deaton Biological Sciences Applied Biological Sciences Stochastic electrotransport selectively enhances the transport of highly electromobile molecules Sung-Yon Kim, Jae Hun Cho, Evan Murray, Naveed Bakh, Heejin Choi, Kimberly Ohn, Luzdary Ruelas, Austin Hubbert, Meg McCue, Sara L. Vassallo, Philipp J. Keller, and Kwanghun Chung Biochemistry Single-molecule visualization of RecQ helicase reveals DNA melting, nucleation, and assembly are required for processive DNA unwinding Behzad Rad, Anthony L. Forget, Ronald J. Baskin, and Stephen C. Kowalczykowski Structural basis for the binding of tryptophan-based motifs by δ-COP Richard J. Suckling, Pak Phi Poon, Sophie M. Travis, Irina V. Majoul, Frederick M. Hughson, Philip R. Evans, Rainer Duden, and David J. Owen Gating mechanisms of a natural anion channelrhodopsin Oleg A. Sineshchekov, Elena G. Govorunova, Hai Li, and John L. Spudich Biophysics and Computational Biology Direct force measurements reveal that protein Tau confers short-range attractions and isoform-dependent steric stabilization to microtubules Peter J. Chung, Myung Chul Choi, Herbert P. Miller, H. Eric Feinstein, Uri Raviv, Youli Li, Leslie Wilson, Stuart C. Feinstein, and Cyrus R. Safinya On artifacts in single-molecule force spectroscopy Pilar Cossio, Gerhard Hummer, and Attila Szabo Electron cryotomography reveals ultrastructure alterations in platelets from patients with ovarian cancer  Rui Wang, Rebecca L. Stone, Jason T. Kaelber, Ryan H. Rochat, Alpa M. Nick, K. Vinod Vijayan, Vahid Afshar-Kharghan, Michael F. Schmid, Jing-Fei Dong, Anil K. Sood, and Wah Chiu High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction Jessica L. Thomaston, Mercedes Alfonso-Prieto, Rahel A. Woldeyes, James S. Fraser, Michael L. Klein, Giacomo Fiorin, and William F. DeGrado Single-molecule view of basal activity and activation mechanisms of the G protein-coupled receptor β2AR Rajan Lamichhane, Jeffrey J. Liu, Goran Pljevaljcic, Kate L. White, Edwin van der Schans, Vsevolod Katritch, Raymond C. Stevens, Kurt Wüthrich, and David P. Millar Direct real-time detection of the structural and biochemical events in the myosin power stroke Joseph M. Muretta, John A. Rohde, Daniel O. Johnsrud, Sinziana Cornea, and David D. Thomas Cell Biology Screening for tumor suppressors: Loss of ephrin receptor A2 cooperates with oncogenic KRas in promoting lung adenocarcinoma Narayana Yeddula, Yifeng Xia, Eugene Ke, Joep Beumer, and Inder M. Verma Telomeric repeat-containing RNA (TERRA) constitutes a nucleoprotein component of extracellular inflammatory exosomes  Zhuo Wang, Zhong Deng, Nadia Dahmane, Kevin Tsai, Pu Wang, Dewight R. Williams, Andrew V. Kossenkov, Louise C. Showe, Rugang Zhang, Qihong Huang, José R. Conejo-Garcia, and Paul M. Lieberman Temperature compensation and temperature sensation in the circadian clock Philip B. Kidd, Michael W. Young, and Eric D. Siggia JAK inhibition alleviates the cellular senescence-associated secretory phenotype and frailty in old age  Ming Xu, Tamara Tchkonia, Husheng Ding, Mikolaj Ogrodnik, Ellen R. Lubbers, Tamar Pirtskhalava, Thomas A. White, Kurt O. Johnson, Michael B. Stout, Vojtech Mezera, Nino Giorgadze, Michael D. Jensen, Nathan K. LeBrasseur, and James L. Kirkland Chronic centrosome amplification without tumorigenesis Benjamin Vitre, Andrew J. Holland, Anita Kulukian, Ofer Shoshani, Maretoshi Hirai, Yin Wang, Marcus Maldonado, Thomas Cho, Jihane Boubaker, Deborah A. Swing, Lino Tessarollo, Sylvia M. Evans, Elaine Fuchs, and Don W. Cleveland Epidermal development, growth control, and homeostasis in the face of centrosome amplification  Anita Kulukian, Andrew J. Holland, Benjamin Vitre, Shruti Naik, Don W. Cleveland, and Elaine Fuchs PML IV/ARF interaction enhances p53 SUMO-1 conjugation, activation, and senescence Lisa Ivanschitz, Yuki Takahashi, Florence Jollivet, Olivier Ayrault, Morgane Le Bras, and Hugues de Thé Developmental Biology The cerebral cavernous malformation proteins CCM2L and CCM2 prevent the activation of the MAP kinase MEKK3 Xavier Cullere, Eva Plovie, Paul M. Bennett, Calum A. MacRae, and Tanya N. Mayadas Fourteen babies born after round spermatid injection into human oocytes  Atsushi Tanaka, Motoi Nagayoshi, Youichi Takemoto, Izumi Tanaka, Hiroshi Kusunoki, Seiji Watanabe, Keiji Kuroda, Satoru Takeda, Masahiko Ito, and Ryuzo Yanagimachi Ecology Persistent impacts of West Nile virus on North American bird populations T. Luke George, Ryan J. Harrigan, Joseph A. LaManna, David F. DeSante, James F. Saracco, and Thomas B. Smith Facilitation shifts paradigms and can amplify coastal restoration efforts  Brian R. Silliman, Elizabeth Schrack, Qiang He, Rebecca Cope, Amanda Santoni, Tjisse van der Heide, Ralph Jacobi, Mike Jacobi, and Johan van de Koppel Fat, weather, and date affect migratory songbirds' departure decisions, routes, and time it takes to cross the Gulf of Mexico Jill L. Deppe, Michael P. Ward, Rachel T. Bolus, Robert H. Diehl, Antonio Celis-Murillo, Theodore J. Zenzal Jr., Frank R. Moore, Thomas J. Benson, Jaclyn A. Smolinsky, Lynn N. Schofield, David A. Enstrom, Eben H. Paxton, Gil Bohrer, Tara A. Beveroth, Arlo Raim, Renee L. Obringer, David Delaney, and William W. Cochran Environmental Sciences Seasonal fluxes of carbonyl sulfide in a midlatitude forest Róisín Commane, Laura K. Meredith, Ian T. Baker, Joseph A. Berry, J. William Munger, Stephen A. Montzka, Pamela H. Templer, Stephanie M. Juice, Mark S. Zahniser, and Steven C. Wofsy Life and extinction of megafauna in the ice-age Arctic  Daniel H. Mann, Pamela Groves, Richard E. Reanier, Benjamin V. Gaglioti, Michael L. Kunz, and Beth Shapiro Evolution Community rescue in experimental metacommunities Etienne Low-Décarie, Marcus Kolber, Paige Homme, Andrea Lofano, Alex Dumbrell, Andrew Gonzalez, and Graham Bell The bioenergetic costs of a gene Michael Lynch and Georgi K. Marinov Genetics Single-molecule motions and interactions in live cells reveal target search dynamics in mismatch repair Yi Liao, Jeremy W. Schroeder, Burke Gao, Lyle A. Simmons, and Julie S. Biteen Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth Evelina Y. Basenko, Takahiko Sasaki, Lexiang Ji, Cameron J. Prybol, Rachel M. Burckhardt, Robert J. Schmitz, and Zachary A. Lewis Immunology and Inflammation An anticomplement agent that homes to the damaged brain and promotes recovery after traumatic brain injury in mice  Marieta M. Ruseva, Valeria Ramaglia, B. Paul Morgan, and Claire L. Harris Medical Sciences Reduced DOCK4 expression leads to erythroid dysplasia in myelodysplastic syndromes  Sriram Sundaravel, Ryan Duggan, Tushar Bhagat, David L. Ebenezer, Hui Liu, Yiting Yu, Matthias Bartenstein, Madhu Unnikrishnan, Subhradip Karmakar, Ting-Chun Liu, Ingrid Torregroza, Thomas Quenon, John Anastasi, Kathy L. McGraw, Andrea Pellagatti, Jacqueline Boultwood, Vijay Yajnik, Andrew Artz, Michelle M. Le Beau, Ulrich Steidl, Alan F. List, Todd Evans, Amit Verma, and Amittha Wickrema Kinetics methods for clinical epidemiology problems Alexandru Dan Corlan and John Ross Amino-terminal p53 mutations lead to expression of apoptosis proficient p47 and prognosticate better survival, but predispose to tumorigenesis  Beng Hooi Phang, Rashidah Othman, Gaelle Bougeard, Ren Hui Chia, Thierry Frebourg, Choong Leong Tang, Peh Yean Cheah, and Kanaga Sabapathy Distinguishing the immunostimulatory properties of noncoding RNAs expressed in cancer cells  Antoine Tanne, Luciana R. Muniz, Anna Puzio-Kuter, Katerina I. Leonova, Andrei V. Gudkov, David T. Ting, Rémi Monasson, Simona Cocco, Arnold J. Levine, Nina Bhardwaj, and Benjamin D. Greenbaum Role of vascular density and normalization in response to neoadjuvant bevacizumab and chemotherapy in breast cancer patients  Sara M. Tolaney, Yves Boucher, Dan G. Duda, John D. Martin, Giorgio Seano, Marek Ancukiewicz, William T. Barry, Shom Goel, Johanna Lahdenrata, Steven J. Isakoff, Eren D. Yeh, Saloni R. Jain, Mehra Golshan, Jane Brock, Matija Snuderl, Eric P. Winer, Ian E. Krop, and Rakesh K. Jain Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images  Duc Fehr, Harini Veeraraghavan, Andreas Wibmer, Tatsuo Gondo, Kazuhiro Matsumoto, Herbert Alberto Vargas, Evis Sala, Hedvig Hricak, and Joseph O. Deasy Pericentromeric satellite repeat expansions through RNA-derived DNA intermediates in cancer Francesca Bersani, Eunjung Lee, Peter V. Kharchenko, Andrew W. Xu, Mingzhu Liu, Kristina Xega, Olivia C. MacKenzie, Brian W. Brannigan, Ben S. Wittner, Hyunchul Jung, Sridhar Ramaswamy, Peter J. Park, Shyamala Maheswaran, David T. Ting, and Daniel A. Haber Microbiology Bacterial clade with the ribosomal RNA operon on a small plasmid rather than the chromosome Mizue Anda, Yoshiyuki Ohtsubo, Takashi Okubo, Masayuki Sugawara, Yuji Nagata, Masataka Tsuda, Kiwamu Minamisawa, and Hisayuki Mitsui Virion-associated phosphatidylethanolamine promotes TIM1-mediated infection by Ebola, dengue, and West Nile viruses  Audrey Stéphanie Richard, Adam Zhang, Sun-Jin Park, Michael Farzan, Min Zong, and Hyeryun Choe Deciphering tissue-induced Klebsiella pneumoniae lipid A structure Enrique Llobet, Verónica Martínez-Moliner, David Moranta, Käthe M. Dahlström, Verónica Regueiro, Anna Tomás, Victoria Cano, Camino Pérez-Gutiérrez, Christian G. Frank, Helena Fernández-Carrasco, José Luis Insua, Tiina A. Salminen, Junkal Garmendia, and José A. Bengoechea Evolutionary origins of hepatitis A virus in small mammals Jan Felix Drexler, Victor M. Corman, Alexander N. Lukashev, Judith M. A. van den Brand, Anatoly P. Gmyl, Sebastian Brünink, Andrea Rasche, Nicole Seggewiβ, Hui Feng, Lonneke M. Leijten, Peter Vallo, Thijs Kuiken, Andreas Dotzauer, Rainer G. Ulrich, Stanley M. Lemon, Christian Drosten, and the Hepatovirus Ecology Consortium Role of HIV-1 matrix protein p17 variants in lymphoma pathogenesis  Riccardo Dolcetti, Cinzia Giagulli, Wangxiao He, Marina Selleri, Francesca Caccuri, Lindsay M. Eyzaguirre, Pietro Mazzuca, Silvia Corbellini, Federica Campilongo, Stefania Marsico, Emanuela Giombini, Elena Muraro, Gabriella Rozera, Paolo De Paoli, Antonino Carbone, Maria Rosaria Capobianchi, Giuseppe Ippolito, Simona Fiorentini, William A. Blattner, Wuyuan Lu, Robert C. Gallo, and Arnaldo Caruso Neuroscience Diversity of sharp-wave–ripple LFP signatures reveals differentiated brain-wide dynamical events  Juan F. Ramirez-Villegas, Nikos K. Logothetis, and Michel Besserve Development and aging of cortical thickness correspond to genetic organization patterns Anders M. Fjell, Håkon Grydeland, Stine K. Krogsrud, Inge Amlien, Darius A. Rohani, Lia Ferschmann, Andreas B. Storsve, Christian K. Tamnes, Roser Sala-Llonch, Paulina Due-Tønnessen, Atle Bjørnerud, Anne Elisabeth Sølsnes, Asta K. Håberg, Jon Skranes, Hauke Bartsch, Chi-Hua Chen, Wesley K. Thompson, Matthew S. Panizzon, William S. Kremen, Anders M. Dale, and Kristine B. Walhovd Physiology Ryanodine receptor fragmentation and sarcoplasmic reticulum Ca2+ leak after one session of high-intensity interval exercise Nicolas Place, Niklas Ivarsson, Tomas Venckunas, Daria Neyroud, Marius Brazaitis, Arthur J. Cheng, Julien Ochala, Sigitas Kamandulis, Sebastien Girard, Gintautas Volungevičius, Henrikas Paužas, Abdelhafid Mekideche, Bengt Kayser, Vicente Martinez-Redondo, Jorge L. Ruas, Joseph Bruton, Andre Truffert, Johanna T. Lanner, Albertas Skurvydas, and Håkan Westerblad Maternal testosterone exposure increases anxiety-like behavior and impacts the limbic system in the offspring  Min Hu, Jennifer Elise Richard, Manuel Maliqueo, Milana Kokosar, Romina Fornes, Anna Benrick, Thomas Jansson, Claes Ohlsson, Xiaoke Wu, Karolina Patrycja Skibicka, and Elisabet Stener-Victorin Plant Biology Plant Raf-like kinase integrates abscisic acid and hyperosmotic stress signaling upstream of SNF1-related protein kinase2  Masashi Saruhashi, Totan Kumar Ghosh, Kenta Arai, Yumiko Ishizaki, Kazuya Hagiwara, Kenji Komatsu, Yuh Shiwa, Keiichi Izumikawa, Harunori Yoshikawa, Taishi Umezawa, Yoichi Sakata, and Daisuke Takezawa Hormone-regulated defense and stress response networks contribute to heterosis in Arabidopsis F1 hybrids  Michael Groszmann, Rebeca Gonzalez-Bayon, Rebecca L. Lyons, Ian K. Greaves, Kemal Kazan, W. James Peacock, and Elizabeth S. Dennis Unique COPII component AtSar1a/AtSec23a pair is required for the distinct function of protein ER export in Arabidopsis thaliana Yonglun Zeng, Kin Pan Chung, Baiying Li, Ching Man Lai, Sheung Kwan Lam, Xiangfeng Wang, Yong Cui, Caiji Gao, Ming Luo, Kam-Bo Wong, Randy Schekman, and Liwen Jiang Host target modification as a strategy to counter pathogen hijacking of the jasmonate hormone receptor Li Zhang, Jian Yao, John Withers, Xiu-Fang Xin, Rahul Banerjee, Qazi Fariduddin, Yoko Nakamura, Kinya Nomura, Gregg A. Howe, Wilhelm Boland, Honggao Yan, and Sheng Yang He Psychological and Cognitive Sciences The human hippocampus contributes to both the recollection and familiarity components of recognition memory Maxwell B. Merkow, John F. Burke, and Michael J. Kahana Sustainability Science An analysis of ozone damage to historical maize and soybean yields in the United States  Justin M. McGrath, Amy M. Betzelberger, Shaowen Wang, Eric Shook, Xin-Guang Zhu, Stephen P. Long, and Elizabeth A. Ainsworth Corrections Correction for Futrell et al., Large-scale evidence of dependency length minimization in 37 languages Correction for Dequéant et al., Discovery of progenitor cell signatures by time-series synexpression analysis during Drosophila embryonic cell immortalization Correction for Samaha et al., Top-down control of the phase of alpha-band oscillations as a mechanism for temporal prediction SI Correction Correction to Supporting Information for Kowalewski et al., HLA ligandome analysis identifies the underlying specificities of spontaneous antileukemia immune responses in chronic lymphocytic leukemia (CLL) Open Access From the Cover Inaugural Article Classic Cozzarelli Prize Winner Front Matter This message was sent to pascal.alter@gmail.com. (....) Copyright © 2015 by the National Academy of Sciences