13 lipca 2016

Fwd: PNAS Table of Contents for 12 July 2016; Vol. 113, No. 28

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Subject: PNAS Table of Contents for 12 July 2016; Vol. 113, No. 28
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This Week in PNAS

Letters (Online Only)
Reply to Bistline and Blanford: Letter reaffirms conclusions and highlights flaws in previous research
Mark Z. Jacobson, Mark A. Delucchi, Mary A. Cameron, and Bethany A. Frew

News Feature
An in-depth look at trending science issues.

QnAs
QnAs with Jorge Galán
Farooq Ahmed

Profile
Profile of Martin Matzuk
Jennifer Viegas

Commentaries
Holsteins are the genomic selection poster cows
Jeremy F. Taylor, Kristen H. Taylor, and Jared E. Decker
When genes and environment disagree: Making sense of trends in recent human evolution Open Access Article
Alexandre Courtiol, Felix C. Tropf, and Melinda C. Mills

PNAS Plus Significance Statements
Brief statements written by the authors about the significance of their papers.

Physical Sciences
Applied Physical Sciences
Nanofluid of graphene-based amphiphilic Janus nanosheets for tertiary or enhanced oil recovery: High performance at low concentration
Dan Luo, Feng Wang, Jingyi Zhu, Feng Cao, Yuan Liu, Xiaogang Li, Richard C. Willson, Zhaozhong Yang, Ching-Wu Chu, and Zhifeng Ren
Chemistry
Direct calorimetric verification of thermodynamic instability of lead halide hybrid perovskites
G. P. Nagabhushana, Radha Shivaramaiah, and Alexandra Navrotsky
Computational and experimental investigations of one-step conversion of poly(carbonate)s into value-added poly(aryl ether sulfone)s
Gavin O. Jones, Alexander Yuen, Rudy J. Wojtecki, James L. Hedrick, and Jeannette M. García
A study of interstellar aldehydes and enols as tracers of a cosmic ray-driven nonequilibrium synthesis of complex organic molecules
Matthew J. Abplanalp, Samer Gozem, Anna I. Krylov, Christopher N. Shingledecker, Eric Herbst, and Ralf I. Kaiser
Earth, Atmospheric, and Planetary Sciences
Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia Open Access Article
Roland Hatzenpichler, Stephanie A. Connon, Danielle Goudeau, Rex R. Malmstrom, Tanja Woyke, and Victoria J. Orphan
Detecting regional patterns of changing CO2 flux in Alaska
Nicholas C. Parazoo, Roisin Commane, Steven C. Wofsy, Charles D. Koven, Colm Sweeney, David M. Lawrence, Jakob Lindaas, Rachel Y.-W. Chang, and Charles E. Miller
Dynamic X-ray diffraction observation of shocked solid iron up to 170 GPa
Adrien Denoeud, Norimasa Ozaki, Alessandra Benuzzi-Mounaix, Hiroyuki Uranishi, Yoshihiko Kondo, Ryosuke Kodama, Erik Brambrink, Alessandra Ravasio, Maimouna Bocoum, Jean-Michel Boudenne, Marion Harmand, François Guyot, Stephane Mazevet, David Riley, Mikako Makita, Takayoshi Sano, Youichi Sakawa, Yuichi Inubushi, Gianluca Gregori, Michel Koenig, and Guillaume Morard
Engineering
Theranostic near-infrared fluorescent nanoplatform for imaging and systemic siRNA delivery to metastatic anaplastic thyroid cancer
Yanlan Liu, Viswanath Gunda, Xi Zhu, Xiaoding Xu, Jun Wu, Diana Askhatova, Omid C. Farokhzad, Sareh Parangi, and Jinjun Shi
Biomechanics of red blood cells in human spleen and consequences for physiology and disease Open Access Article
Igor V. Pivkin, Zhangli Peng, George E. Karniadakis, Pierre A. Buffet, Ming Dao, and Subra Suresh
Environmental Sciences
Air pollutant emissions from Chinese households: A major and underappreciated ambient pollution source Open Access Article
Jun Liu, Denise L. Mauzerall, Qi Chen, Qiang Zhang, Yu Song, Wei Peng, Zbigniew Klimont, Xinghua Qiu, Shiqiu Zhang, Min Hu, Weili Lin, Kirk R. Smith, and Tong Zhu
Influence of ammonia oxidation rate on thaumarchaeal lipid composition and the TEX86 temperature proxy
Sarah J. Hurley, Felix J. Elling, Martin Könneke, Carolyn Buchwald, Scott D. Wankel, Alyson E. Santoro, Julius Sebastian Lipp, Kai-Uwe Hinrichs, and Ann Pearson
Statistics
Algorithmic methods to infer the evolutionary trajectories in cancer progression
Giulio Caravagna, Alex Graudenzi, Daniele Ramazzotti, Rebeca Sanz-Pamplona, Luca De Sano, Giancarlo Mauri, Victor Moreno, Marco Antoniotti, and Bud Mishra

Social Sciences
Psychological and Cognitive Sciences
A face-selective ventral occipito-temporal map of the human brain with intracerebral potentials
Jacques Jonas, Corentin Jacques, Joan Liu-Shuang, Hélène Brissart, Sophie Colnat-Coulbois, Louis Maillard, and Bruno Rossion
Social Sciences

Biological Sciences
Agricultural Sciences
Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection Open Access Article
Adriana García-Ruiz, John B. Cole, Paul M. VanRaden, George R. Wiggans, Felipe J. Ruiz-López, and Curtis P. Van Tassell
Anthropology
Faster reproductive rates trade off against offspring growth in wild chimpanzees
Melissa Emery Thompson, Martin N. Muller, Kris Sabbi, Zarin P. Machanda, Emily Otali, and Richard W. Wrangham
Biochemistry
Gpr161 anchoring of PKA consolidates GPCR and cAMP signaling Open Access Article
Verena A. Bachmann, Johanna E. Mayrhofer, Ronit Ilouz, Philipp Tschaikner, Philipp Raffeiner, Ruth Röck, Mathieu Courcelles, Federico Apelt, Tsan-Wen Lu, George S. Baillie, Pierre Thibault, Pia Aanstad, Ulrich Stelzl, Susan S. Taylor, and Eduard Stefan
Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair
Chenxu Zhu, Lining Lu, Jun Zhang, Zongwei Yue, Jinghui Song, Shuai Zong, Menghao Liu, Olivia Stovicek, Yi Qin Gao, and Chengqi Yi
Substrate-assisted mechanism of RNP disruption by the spliceosomal Brr2 RNA helicase
Matthias Theuser, Claudia Höbartner, Markus C. Wahl, and Karine F. Santos
Biophysics and Computational Biology
Algorithmic methods to infer the evolutionary trajectories in cancer progression
Giulio Caravagna, Alex Graudenzi, Daniele Ramazzotti, Rebeca Sanz-Pamplona, Luca De Sano, Giancarlo Mauri, Victor Moreno, Marco Antoniotti, and Bud Mishra
Biomechanics of red blood cells in human spleen and consequences for physiology and disease Open Access Article
Igor V. Pivkin, Zhangli Peng, George E. Karniadakis, Pierre A. Buffet, Ming Dao, and Subra Suresh
Structure of the human 26S proteasome at a resolution of 3.9 Å Open Access Article
Andreas Schweitzer, Antje Aufderheide, Till Rudack, Florian Beck, Günter Pfeifer, Jürgen M. Plitzko, Eri Sakata, Klaus Schulten, Friedrich Förster, and Wolfgang Baumeister
Enzyme surface rigidity tunes the temperature dependence of catalytic rates Open Access Article
Geir Villy Isaksen, Johan Åqvist, and Bjørn Olav Brandsdal
Cell Biology
Phospholipase Cβ1 induces membrane tubulation and is involved in caveolae formation
Takehiko Inaba, Takuma Kishimoto, Motohide Murate, Takuya Tajima, Shota Sakai, Mitsuhiro Abe, Asami Makino, Nario Tomishige, Reiko Ishitsuka, Yasuo Ikeda, Shinji Takeoka, and Toshihide Kobayashi
Developmental Biology
Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice Open Access Article Inaugural Article
Haruhiko Miyata, Julio M. Castaneda, Yoshitaka Fujihara, Zhifeng Yu, Denise R. Archambeault, Ayako Isotani, Daiji Kiyozumi, Maya L. Kriseman, Daisuke Mashiko, Takafumi Matsumura, Ryan M. Matzuk, Masashi Mori, Taichi Noda, Asami Oji, Masaru Okabe, Renata Prunskaite-Hyyrylainen, Ramiro Ramirez-Solis, Yuhkoh Satouh, Qian Zhang, Masahito Ikawa, and Martin M. Matzuk
Gene targeting of the transcription factor Mohawk in rats causes heterotopic ossification of Achilles tendon via failed tenogenesis From the Cover
Hidetsugu Suzuki, Yoshiaki Ito, Masahiro Shinohara, Satoshi Yamashita, Shizuko Ichinose, Akio Kishida, Takuya Oyaizu, Tomohiro Kayama, Ryo Nakamichi, Naoki Koda, Kazuyoshi Yagishita, Martin K. Lotz, Atsushi Okawa, and Hiroshi Asahara
Ecology
Macronutrient ratios in pollen shape bumble bee (Bombus impatiens) foraging strategies and floral preferences
Anthony D. Vaudo, Harland M. Patch, David A. Mortensen, John F. Tooker, and Christina M. Grozinger
Large-scale climatic and geophysical controls on the leaf economics spectrum
Gregory P. Asner, David E. Knapp, Christopher B. Anderson, Roberta E. Martin, and Nicholas Vaughn
Detecting regional patterns of changing CO2 flux in Alaska
Nicholas C. Parazoo, Roisin Commane, Steven C. Wofsy, Charles D. Koven, Colm Sweeney, David M. Lawrence, Jakob Lindaas, Rachel Y.-W. Chang, and Charles E. Miller
Evolution
Genetics
Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms Open Access Article
Luis Zapata, Jia Ding, Eva-Maria Willing, Benjamin Hartwig, Daniela Bezdan, Wen-Biao Jiao, Vipul Patel, Geo Velikkakam James, Maarten Koornneef, Stephan Ossowski, and Korbinian Schneeberger
Immunology and Inflammation
Highly sensitive and unbiased approach for elucidating antibody repertoires
Sherry G. Lin, Zhaoqing Ba, Zhou Du, Yu Zhang, Jiazhi Hu, and Frederick W. Alt
Human antibody responses after dengue virus infection are highly cross-reactive to Zika virus Open Access Article
Lalita Priyamvada, Kendra M. Quicke, William H. Hudson, Nattawat Onlamoon, Jaturong Sewatanon, Srilatha Edupuganti, Kovit Pattanapanyasat, Kulkanya Chokephaibulkit, Mark J. Mulligan, Patrick C. Wilson, Rafi Ahmed, Mehul S. Suthar, and Jens Wrammert
GsdmD p30 elicited by caspase-11 during pyroptosis forms pores in membranes Open Access Article
Robin A. Aglietti, Alberto Estevez, Aaron Gupta, Monica Gonzalez Ramirez, Peter S. Liu, Nobuhiko Kayagaki, Claudio Ciferri, Vishva M. Dixit, and Erin C. Dueber
Distinct oligoclonal band antibodies in multiple sclerosis recognize ubiquitous self-proteins From the Cover
Simone M. Brändle, Birgit Obermeier, Makbule Senel, Jessica Bruder, Reinhard Mentele, Mohsen Khademi, Tomas Olsson, Hayrettin Tumani, Wolfgang Kristoferitsch, Friedrich Lottspeich, Hartmut Wekerle, Reinhard Hohlfeld, and Klaus Dornmair
Medical Sciences
Dose-dependent role of claudin-1 in vivo in orchestrating features of atopic dermatitis
Reitaro Tokumasu, Kosuke Yamaga, Yuji Yamazaki, Hiroyuki Murota, Koya Suzuki, Atsushi Tamura, Kana Bando, Yasuhide Furuta, Ichiro Katayama, and Sachiko Tsukita
Theranostic near-infrared fluorescent nanoplatform for imaging and systemic siRNA delivery to metastatic anaplastic thyroid cancer
Yanlan Liu, Viswanath Gunda, Xi Zhu, Xiaoding Xu, Jun Wu, Diana Askhatova, Omid C. Farokhzad, Sareh Parangi, and Jinjun Shi
Microbiology
Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia Open Access Article
Roland Hatzenpichler, Stephanie A. Connon, Danielle Goudeau, Rex R. Malmstrom, Tanja Woyke, and Victoria J. Orphan
Solid tumor therapy by selectively targeting stromal endothelial cells
Shihui Liu, Jie Liu, Qian Ma, Liu Cao, Rasem J. Fattah, Zuxi Yu, Thomas H. Bugge, Toren Finkel, and Stephen H. Leppla
Septins guide microtubule protrusions induced by actin-depolymerizing toxins like Clostridium difficile transferase (CDT)
Thilo Nölke, Carsten Schwan, Friederike Lehmann, Kristine Østevold, Olivier Pertz, and Klaus Aktories
A viral kinase mimics S6 kinase to enhance cell proliferation
Aadra Prashant Bhatt, Jason P. Wong, Marc S. Weinberg, Kurtis M. Host, Louise C. Giffin, Joshua Buijnink, Evert van Dijk, Yoshihiro Izumiya, Hsing-jien Kung, Brenda R. S. Temple, and Blossom Damania
FtsK translocation permits discrimination between an endogenous and an imported Xer/dif recombination complex Open Access Article From the Cover
Florian Fournes, Estelles Crozat, Carine Pages, Catherine Tardin, Laurence Salomé, François Cornet, and Philippe Rousseau
Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea Open Access Article
Jong-Geol Kim, Soo-Je Park, Jaap S. Sinninghe Damsté, Stefan Schouten, W. Irene C. Rijpstra, Man-Young Jung, So-Jeong Kim, Joo-Han Gwak, Heeji Hong, Ok-Ja Si, SangHoon Lee, Eugene L. Madsen, and Sung-Keun Rhee
Bacterial lipids activate, synergize, and inhibit a developmental switch in choanoflagellates Open Access Article
Arielle Woznica, Alexandra M. Cantley, Christine Beemelmanns, Elizaveta Freinkman, Jon Clardy, and Nicole King
Neuroscience
A face-selective ventral occipito-temporal map of the human brain with intracerebral potentials
Jacques Jonas, Corentin Jacques, Joan Liu-Shuang, Hélène Brissart, Sophie Colnat-Coulbois, Louis Maillard, and Bruno Rossion
Epigenetics and energetics in ventral hippocampus mediate rapid antidepressant action: Implications for treatment resistance
Benedetta Bigio, Aleksander A. Mathé, Vasco C. Sousa, Danielle Zelli, Per Svenningsson, Bruce S. McEwen, and Carla Nasca
Physiological role for amyloid precursor protein in adult experience-dependent plasticity
Sally A. Marik, Olav Olsen, Marc Tessier-Lavigne, and Charles D. Gilbert
Dopamine D2 receptor availability is linked to hippocampal–caudate functional connectivity and episodic memory Open Access Article
Lars Nyberg, Nina Karalija, Alireza Salami, Micael Andersson, Anders Wåhlin, Neda Kaboovand, Ylva Köhncke, Jan Axelsson, Anna Rieckmann, Goran Papenberg, Douglas D. Garrett, Katrine Riklund, Martin Lövdén, Ulman Lindenberger, and Lars Bäckman
Pharmacology
ATP: The crucial component of secretory vesicles
Judith Estévez-Herrera, Natalia Domínguez, Marta R. Pardo, Ayoze González-Santana, Edward W. Westhead, Ricardo Borges, and José David Machado
β-arrestin–biased signaling through the β2-adrenergic receptor promotes cardiomyocyte contraction
Richard Carr III, Justin Schilling, Jianliang Song, Rhonda L. Carter, Yang Du, Sungsoo M. Yoo, Christopher J. Traynham, Walter J. Koch, Joseph Y. Cheung, Douglas G. Tilley, and Jeffrey L. Benovic

Corrections (Online Only)
Cover

Open Access
From the Cover
Inaugural Article
Classic
Cozzarelli Prize Winner
Front Matter

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